Results 21 - 40 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10942 | 3' | -53.3 | NC_002794.1 | + | 19891 | 0.66 | 0.986746 |
Target: 5'- ---gCCGACCGCUGccGCgagcacgaccugACCCGCcUGCa -3' miRNA: 3'- uguaGGCUGGCGAU--UG------------UGGGUGcAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 59467 | 0.66 | 0.985761 |
Target: 5'- gACAUCCG-CCGCUAccucgaggaguucccGCACuaccugcgCCACG-ACg -3' miRNA: 3'- -UGUAGGCuGGCGAU---------------UGUG--------GGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 84980 | 0.66 | 0.985074 |
Target: 5'- ---cCCGGCCGCgaAAC-CCCACGa-- -3' miRNA: 3'- uguaGGCUGGCGa-UUGuGGGUGCaug -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 190200 | 0.66 | 0.986746 |
Target: 5'- cGCGcUCCagcGCCGCgcGCACCCGCcggGCg -3' miRNA: 3'- -UGU-AGGc--UGGCGauUGUGGGUGca-UG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 60018 | 0.66 | 0.983246 |
Target: 5'- cGCA-CCGACCuGCUcGACGCCgACGc-- -3' miRNA: 3'- -UGUaGGCUGG-CGA-UUGUGGgUGCaug -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 102542 | 0.66 | 0.983246 |
Target: 5'- --cUCgGGCCGCguggaGACggcgGCCCugGUGCu -3' miRNA: 3'- uguAGgCUGGCGa----UUG----UGGGugCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 28727 | 0.66 | 0.985074 |
Target: 5'- cCGUCCGACCGUguccccGAgGCCCGucgcucCGUAg -3' miRNA: 3'- uGUAGGCUGGCGa-----UUgUGGGU------GCAUg -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 115015 | 0.66 | 0.985074 |
Target: 5'- cGCAcCCG-CCGC--GCGCCCACcgucugcagGUGCg -3' miRNA: 3'- -UGUaGGCuGGCGauUGUGGGUG---------CAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 181748 | 0.66 | 0.985074 |
Target: 5'- aGCggCCGGCCagcccGCUGACGCCgAUG-GCg -3' miRNA: 3'- -UGuaGGCUGG-----CGAUUGUGGgUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 35532 | 0.67 | 0.968556 |
Target: 5'- uACAUCCuGcACCGCgagacccGGCGCUCGCGcGCg -3' miRNA: 3'- -UGUAGG-C-UGGCGa------UUGUGGGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 148318 | 0.67 | 0.968556 |
Target: 5'- gACggCCGACCGCgguuCgACCUGCGUugGCa -3' miRNA: 3'- -UGuaGGCUGGCGauu-G-UGGGUGCA--UG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 184830 | 0.67 | 0.968556 |
Target: 5'- cGCGUCCGGgCGCaccGCGCagcgaUACGUGCc -3' miRNA: 3'- -UGUAGGCUgGCGau-UGUGg----GUGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 183521 | 0.67 | 0.971484 |
Target: 5'- cAUGUCgCGGCCGUgcGCGCCC-CGUcCg -3' miRNA: 3'- -UGUAG-GCUGGCGauUGUGGGuGCAuG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 51378 | 0.67 | 0.968556 |
Target: 5'- cCGUCCGGCCgGCgacaGGCGCCCucCGgGCu -3' miRNA: 3'- uGUAGGCUGG-CGa---UUGUGGGu-GCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 53978 | 0.67 | 0.971484 |
Target: 5'- cCGUCCGGCUGCcccGCGCCaGCGUc- -3' miRNA: 3'- uGUAGGCUGGCGau-UGUGGgUGCAug -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 55014 | 0.67 | 0.974211 |
Target: 5'- gGCGUCCG-CCGCc-GCGCCgcCGCGaGCa -3' miRNA: 3'- -UGUAGGCuGGCGauUGUGG--GUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 115335 | 0.67 | 0.974211 |
Target: 5'- gGCGUCCgGGCCGCUcGGCACguCCAgGcgACa -3' miRNA: 3'- -UGUAGG-CUGGCGA-UUGUG--GGUgCa-UG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 108401 | 0.67 | 0.974211 |
Target: 5'- gGC-UCCGGCgGC-GGCGCCCACcacgGCg -3' miRNA: 3'- -UGuAGGCUGgCGaUUGUGGGUGca--UG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 116997 | 0.67 | 0.971484 |
Target: 5'- cCGUCCG-CgGCgucuCGCCCAgGUACc -3' miRNA: 3'- uGUAGGCuGgCGauu-GUGGGUgCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 110909 | 0.67 | 0.964767 |
Target: 5'- aGCcgCCG-CCGCccgaagagguCGCUCACGUACa -3' miRNA: 3'- -UGuaGGCuGGCGauu-------GUGGGUGCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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