Results 21 - 40 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10942 | 3' | -53.3 | NC_002794.1 | + | 19865 | 0.72 | 0.812948 |
Target: 5'- cGCAcUCGACCGUcuACACCUGCGUGg -3' miRNA: 3'- -UGUaGGCUGGCGauUGUGGGUGCAUg -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 117215 | 0.72 | 0.804129 |
Target: 5'- gGCGgcUCCGGCCGCgucagGGCgACCgaCGCGUGCa -3' miRNA: 3'- -UGU--AGGCUGGCGa----UUG-UGG--GUGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 53755 | 0.72 | 0.821602 |
Target: 5'- uGCcgCCG-CCGCUgccggcggcggGACGCCCGCG-ACg -3' miRNA: 3'- -UGuaGGCuGGCGA-----------UUGUGGGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 41871 | 0.72 | 0.821602 |
Target: 5'- gGCAgggCCGGgCGCUGcCACgCCACGUAg -3' miRNA: 3'- -UGUa--GGCUgGCGAUuGUG-GGUGCAUg -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 68197 | 0.71 | 0.862129 |
Target: 5'- -gAUCCGGCCGCUcuacuGGCAgCgCugGUACc -3' miRNA: 3'- ugUAGGCUGGCGA-----UUGUgG-GugCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 193440 | 0.71 | 0.869636 |
Target: 5'- cCGUCCGGCaCGC---CGCCCACGcACa -3' miRNA: 3'- uGUAGGCUG-GCGauuGUGGGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 16343 | 0.71 | 0.854414 |
Target: 5'- gGCA-CCGACgacgucggCGCcacccGCACCCGCGUGCa -3' miRNA: 3'- -UGUaGGCUG--------GCGau---UGUGGGUGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 95032 | 0.71 | 0.862129 |
Target: 5'- gGCAUCUcGCCGgUGgcgGCGCCCgagGCGUACg -3' miRNA: 3'- -UGUAGGcUGGCgAU---UGUGGG---UGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 153394 | 0.71 | 0.869636 |
Target: 5'- -uGUCCGAUCGCgAGCugUCGCGaGCg -3' miRNA: 3'- ugUAGGCUGGCGaUUGugGGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 12620 | 0.71 | 0.854414 |
Target: 5'- cGCGUCUggGGCCGCUucgagcACACCUACG-ACg -3' miRNA: 3'- -UGUAGG--CUGGCGAu-----UGUGGGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 194138 | 0.71 | 0.862129 |
Target: 5'- gGCAg-CGGCCGCagcAGCGCCCGCGaGCc -3' miRNA: 3'- -UGUagGCUGGCGa--UUGUGGGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 194503 | 0.7 | 0.884004 |
Target: 5'- cGCGcCCGGcCCGCg---GCCCGCGUGCc -3' miRNA: 3'- -UGUaGGCU-GGCGauugUGGGUGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 172045 | 0.7 | 0.884004 |
Target: 5'- cACAUUCGACUgggguacgagauGCUGugGCUCAUGUAUa -3' miRNA: 3'- -UGUAGGCUGG------------CGAUugUGGGUGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 150725 | 0.7 | 0.890854 |
Target: 5'- gACGUgCGGCgGCUGACcgcguuCCCguGCGUGCa -3' miRNA: 3'- -UGUAgGCUGgCGAUUGu-----GGG--UGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 86906 | 0.7 | 0.903867 |
Target: 5'- gGCcgCCGAcCCGgUGACGCCCgugGCGgGCa -3' miRNA: 3'- -UGuaGGCU-GGCgAUUGUGGG---UGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 82784 | 0.7 | 0.903867 |
Target: 5'- cGCAaCCGACCGCc-GCGUCCACGcGCg -3' miRNA: 3'- -UGUaGGCUGGCGauUGUGGGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 118686 | 0.69 | 0.915943 |
Target: 5'- cGCcgCCGGCgGC-AGCGCCCAgGaGCg -3' miRNA: 3'- -UGuaGGCUGgCGaUUGUGGGUgCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 11983 | 0.69 | 0.915362 |
Target: 5'- gGCGUCCGGCgGCUggUugCUgcuguguggacugAUGUGCg -3' miRNA: 3'- -UGUAGGCUGgCGAuuGugGG-------------UGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 190876 | 0.69 | 0.927065 |
Target: 5'- uACAcCCGGCUGCcguGC-CCCAgGUACa -3' miRNA: 3'- -UGUaGGCUGGCGau-UGuGGGUgCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 18618 | 0.69 | 0.915943 |
Target: 5'- gGCA-CCGGCCGCcccuccGACGCCCGCu--- -3' miRNA: 3'- -UGUaGGCUGGCGa-----UUGUGGGUGcaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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