miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 100791 0.79 0.440902
Target:  5'- uGCGguUCgCGGCCGCUucuGCGCCUACGUGCc -3'
miRNA:   3'- -UGU--AG-GCUGGCGAu--UGUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 186648 0.77 0.546148
Target:  5'- cGCGggUCGGCCGCgcGCACCC-CGUACa -3'
miRNA:   3'- -UGUa-GGCUGGCGauUGUGGGuGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 82008 0.76 0.616134
Target:  5'- gACG-CCGGCCGCUGACGCCgaaacccgacgauCGCGUGg -3'
miRNA:   3'- -UGUaGGCUGGCGAUUGUGG-------------GUGCAUg -5'
10942 3' -53.3 NC_002794.1 + 86002 0.75 0.627405
Target:  5'- gACGguUCCGAacCCGCUGGCGCCgACcGUGCg -3'
miRNA:   3'- -UGU--AGGCU--GGCGAUUGUGGgUG-CAUG- -5'
10942 3' -53.3 NC_002794.1 + 184442 0.75 0.66835
Target:  5'- uACAUCUGagcgcGCCGCUGcCGCCCGCGgGCc -3'
miRNA:   3'- -UGUAGGC-----UGGCGAUuGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 35064 0.74 0.688679
Target:  5'- gACcgCCG-CUGCgugGGCGCCCugGUGCc -3'
miRNA:   3'- -UGuaGGCuGGCGa--UUGUGGGugCAUG- -5'
10942 3' -53.3 NC_002794.1 + 58829 0.74 0.698777
Target:  5'- aACcgCCuGCCGCgcgagGACGCCgACGUGCa -3'
miRNA:   3'- -UGuaGGcUGGCGa----UUGUGGgUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 112462 0.74 0.705813
Target:  5'- aGCGUCCGguagcggcucuggaGCUGCUcguAGCGCuCCACGUACc -3'
miRNA:   3'- -UGUAGGC--------------UGGCGA---UUGUG-GGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 69130 0.74 0.708819
Target:  5'- cGCcgCCGACCGCcGGCcaagccgcuucGCCCACGUucACg -3'
miRNA:   3'- -UGuaGGCUGGCGaUUG-----------UGGGUGCA--UG- -5'
10942 3' -53.3 NC_002794.1 + 100307 0.74 0.718796
Target:  5'- cGCcUCCG-CCGCUGGCACgCGCGgccgGCg -3'
miRNA:   3'- -UGuAGGCuGGCGAUUGUGgGUGCa---UG- -5'
10942 3' -53.3 NC_002794.1 + 72047 0.74 0.718796
Target:  5'- -uGUUCG-CCGCUGACccgcagccgguuGCCCGCGUGCc -3'
miRNA:   3'- ugUAGGCuGGCGAUUG------------UGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 851 0.74 0.718796
Target:  5'- uGCGUUCGGCCcaGCgcGCGCCCGCGagGCg -3'
miRNA:   3'- -UGUAGGCUGG--CGauUGUGGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 113264 0.74 0.718796
Target:  5'- cGCGUCCGcCCGCUcggccAGCuCCCGCGUcuGCu -3'
miRNA:   3'- -UGUAGGCuGGCGA-----UUGuGGGUGCA--UG- -5'
10942 3' -53.3 NC_002794.1 + 194728 0.74 0.728699
Target:  5'- cGCGUCaCGAacuccacgcaCCGCUGcaGCACCCACGgcgACu -3'
miRNA:   3'- -UGUAG-GCU----------GGCGAU--UGUGGGUGCa--UG- -5'
10942 3' -53.3 NC_002794.1 + 136001 0.73 0.73754
Target:  5'- -uGUCCGGguccaguCCGCUGGuCACUCGCGUGCc -3'
miRNA:   3'- ugUAGGCU-------GGCGAUU-GUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 59893 0.73 0.74921
Target:  5'- cGCAcCUGcGCCGCgugcgcagcgacaugGGCGCCCGCGUGCa -3'
miRNA:   3'- -UGUaGGC-UGGCGa--------------UUGUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 180678 0.73 0.77677
Target:  5'- aACucgCCGGCCGCUcccGGCGCCCgGCGgGCg -3'
miRNA:   3'- -UGua-GGCUGGCGA---UUGUGGG-UGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 129712 0.72 0.786031
Target:  5'- gGCAUCCGGCCgGUUAACugUCugG-GCg -3'
miRNA:   3'- -UGUAGGCUGG-CGAUUGugGGugCaUG- -5'
10942 3' -53.3 NC_002794.1 + 117215 0.72 0.804129
Target:  5'- gGCGgcUCCGGCCGCgucagGGCgACCgaCGCGUGCa -3'
miRNA:   3'- -UGU--AGGCUGGCGa----UUG-UGG--GUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 19865 0.72 0.812948
Target:  5'- cGCAcUCGACCGUcuACACCUGCGUGg -3'
miRNA:   3'- -UGUaGGCUGGCGauUGUGGGUGCAUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.