miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 188707 0.72 0.812948
Target:  5'- ---cCCGugCGCacGCACaCCGCGUACa -3'
miRNA:   3'- uguaGGCugGCGauUGUG-GGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 53755 0.72 0.821602
Target:  5'- uGCcgCCG-CCGCUgccggcggcggGACGCCCGCG-ACg -3'
miRNA:   3'- -UGuaGGCuGGCGA-----------UUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 41871 0.72 0.821602
Target:  5'- gGCAgggCCGGgCGCUGcCACgCCACGUAg -3'
miRNA:   3'- -UGUa--GGCUgGCGAUuGUG-GGUGCAUg -5'
10942 3' -53.3 NC_002794.1 + 79783 0.72 0.821602
Target:  5'- -gGUUCGcCCGCU-ACGCCCGCGaGCg -3'
miRNA:   3'- ugUAGGCuGGCGAuUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 16343 0.71 0.854414
Target:  5'- gGCA-CCGACgacgucggCGCcacccGCACCCGCGUGCa -3'
miRNA:   3'- -UGUaGGCUG--------GCGau---UGUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 12620 0.71 0.854414
Target:  5'- cGCGUCUggGGCCGCUucgagcACACCUACG-ACg -3'
miRNA:   3'- -UGUAGG--CUGGCGAu-----UGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 95032 0.71 0.862129
Target:  5'- gGCAUCUcGCCGgUGgcgGCGCCCgagGCGUACg -3'
miRNA:   3'- -UGUAGGcUGGCgAU---UGUGGG---UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 68197 0.71 0.862129
Target:  5'- -gAUCCGGCCGCUcuacuGGCAgCgCugGUACc -3'
miRNA:   3'- ugUAGGCUGGCGA-----UUGUgG-GugCAUG- -5'
10942 3' -53.3 NC_002794.1 + 194138 0.71 0.862129
Target:  5'- gGCAg-CGGCCGCagcAGCGCCCGCGaGCc -3'
miRNA:   3'- -UGUagGCUGGCGa--UUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 153394 0.71 0.869636
Target:  5'- -uGUCCGAUCGCgAGCugUCGCGaGCg -3'
miRNA:   3'- ugUAGGCUGGCGaUUGugGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 193440 0.71 0.869636
Target:  5'- cCGUCCGGCaCGC---CGCCCACGcACa -3'
miRNA:   3'- uGUAGGCUG-GCGauuGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 172045 0.7 0.884004
Target:  5'- cACAUUCGACUgggguacgagauGCUGugGCUCAUGUAUa -3'
miRNA:   3'- -UGUAGGCUGG------------CGAUugUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 194503 0.7 0.884004
Target:  5'- cGCGcCCGGcCCGCg---GCCCGCGUGCc -3'
miRNA:   3'- -UGUaGGCU-GGCGauugUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 150725 0.7 0.890854
Target:  5'- gACGUgCGGCgGCUGACcgcguuCCCguGCGUGCa -3'
miRNA:   3'- -UGUAgGCUGgCGAUUGu-----GGG--UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 86906 0.7 0.903867
Target:  5'- gGCcgCCGAcCCGgUGACGCCCgugGCGgGCa -3'
miRNA:   3'- -UGuaGGCU-GGCgAUUGUGGG---UGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 82784 0.7 0.903867
Target:  5'- cGCAaCCGACCGCc-GCGUCCACGcGCg -3'
miRNA:   3'- -UGUaGGCUGGCGauUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 11983 0.69 0.915362
Target:  5'- gGCGUCCGGCgGCUggUugCUgcuguguggacugAUGUGCg -3'
miRNA:   3'- -UGUAGGCUGgCGAuuGugGG-------------UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 118686 0.69 0.915943
Target:  5'- cGCcgCCGGCgGC-AGCGCCCAgGaGCg -3'
miRNA:   3'- -UGuaGGCUGgCGaUUGUGGGUgCaUG- -5'
10942 3' -53.3 NC_002794.1 + 70689 0.69 0.915943
Target:  5'- gACGUCCugucGCCGCUGGggguccCACCCAC-UGCg -3'
miRNA:   3'- -UGUAGGc---UGGCGAUU------GUGGGUGcAUG- -5'
10942 3' -53.3 NC_002794.1 + 153662 0.69 0.915943
Target:  5'- cGCGUCCGGCCGCcgguugUGAgGCUCgACGcGCg -3'
miRNA:   3'- -UGUAGGCUGGCG------AUUgUGGG-UGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.