miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 153662 0.69 0.915943
Target:  5'- cGCGUCCGGCCGCcgguugUGAgGCUCgACGcGCg -3'
miRNA:   3'- -UGUAGGCUGGCG------AUUgUGGG-UGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 39801 0.69 0.921623
Target:  5'- gGCG-CCGACCGUUuuuCGCCCGCa--- -3'
miRNA:   3'- -UGUaGGCUGGCGAuu-GUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 190876 0.69 0.927065
Target:  5'- uACAcCCGGCUGCcguGC-CCCAgGUACa -3'
miRNA:   3'- -UGUaGGCUGGCGau-UGuGGGUgCAUG- -5'
10942 3' -53.3 NC_002794.1 + 11849 0.69 0.932266
Target:  5'- gACcUCCGACCGCcGGCGacgaccgcccgcCCCGCG-ACg -3'
miRNA:   3'- -UGuAGGCUGGCGaUUGU------------GGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 130446 0.68 0.941489
Target:  5'- gGCGUCCGugUugggcggcgaggcGCUGGCGgCUUGCGUGCg -3'
miRNA:   3'- -UGUAGGCugG-------------CGAUUGU-GGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 77293 0.68 0.941951
Target:  5'- uCAUCCGGCUGCUgcccGAC-CgCCACGaACg -3'
miRNA:   3'- uGUAGGCUGGCGA----UUGuG-GGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 85002 0.68 0.941951
Target:  5'- ---cCCGACCGCc-GCGCUCGgGUGCc -3'
miRNA:   3'- uguaGGCUGGCGauUGUGGGUgCAUG- -5'
10942 3' -53.3 NC_002794.1 + 27602 0.68 0.941951
Target:  5'- cCAUCCGACCGUc--CACCCGguCGgACg -3'
miRNA:   3'- uGUAGGCUGGCGauuGUGGGU--GCaUG- -5'
10942 3' -53.3 NC_002794.1 + 126953 0.68 0.945999
Target:  5'- uGCGUUugagcgaCGACCGCgagAGCGgCCGCGUGu -3'
miRNA:   3'- -UGUAG-------GCUGGCGa--UUGUgGGUGCAUg -5'
10942 3' -53.3 NC_002794.1 + 89966 0.68 0.946437
Target:  5'- gGCGUUCgGACCGUgguGCGCCgGCGUuCg -3'
miRNA:   3'- -UGUAGG-CUGGCGau-UGUGGgUGCAuG- -5'
10942 3' -53.3 NC_002794.1 + 56570 0.68 0.946437
Target:  5'- cGCcgCCGACCGCccgcgccgcGGCGCCCGCc--- -3'
miRNA:   3'- -UGuaGGCUGGCGa--------UUGUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 52603 0.68 0.946437
Target:  5'- gACGUCCGcCCGa-GACGCCCGCccgACc -3'
miRNA:   3'- -UGUAGGCuGGCgaUUGUGGGUGca-UG- -5'
10942 3' -53.3 NC_002794.1 + 3737 0.68 0.946437
Target:  5'- gACAUCgCGACCGC-AACGCgcgUCACGgcgggGCg -3'
miRNA:   3'- -UGUAG-GCUGGCGaUUGUG---GGUGCa----UG- -5'
10942 3' -53.3 NC_002794.1 + 184405 0.68 0.950689
Target:  5'- cACGUCCGACagCGCgcuCACCgGCagGUGCa -3'
miRNA:   3'- -UGUAGGCUG--GCGauuGUGGgUG--CAUG- -5'
10942 3' -53.3 NC_002794.1 + 14767 0.68 0.950689
Target:  5'- cCGUCgaGGCCGCUGAgGCCgGCGa-- -3'
miRNA:   3'- uGUAGg-CUGGCGAUUgUGGgUGCaug -5'
10942 3' -53.3 NC_002794.1 + 126090 0.68 0.954709
Target:  5'- uGCggCCGACCGaCUGGCuuccgGCCCugG-GCg -3'
miRNA:   3'- -UGuaGGCUGGC-GAUUG-----UGGGugCaUG- -5'
10942 3' -53.3 NC_002794.1 + 69828 0.68 0.954709
Target:  5'- gGCGUCCGcccgguCCGCUGGCucaccGCCuCGCGaACa -3'
miRNA:   3'- -UGUAGGCu-----GGCGAUUG-----UGG-GUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 75667 0.68 0.954709
Target:  5'- cCGUCCG-CCGCUAcACGCUCGCcgacUACa -3'
miRNA:   3'- uGUAGGCuGGCGAU-UGUGGGUGc---AUG- -5'
10942 3' -53.3 NC_002794.1 + 81227 0.68 0.958501
Target:  5'- uCGUCCccccgGGCCGCgcGCGCaCCACGgACg -3'
miRNA:   3'- uGUAGG-----CUGGCGauUGUG-GGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 103781 0.68 0.958501
Target:  5'- uGCAucUCCGGCgGCUGagcuugagguGCGCCUGCG-ACg -3'
miRNA:   3'- -UGU--AGGCUGgCGAU----------UGUGGGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.