miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 124782 0.66 0.979089
Target:  5'- gACGUCCaACCGCgaccUGACcaaguUCUACGUGCa -3'
miRNA:   3'- -UGUAGGcUGGCG----AUUGu----GGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 195112 0.66 0.979089
Target:  5'- gGCGUCuCGugCGCccGCggcgcgcgcggGCUCGCGUACa -3'
miRNA:   3'- -UGUAG-GCugGCGauUG-----------UGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 144444 0.66 0.979089
Target:  5'- uGCAgCCGugCGC--GCACCUGCGcgACu -3'
miRNA:   3'- -UGUaGGCugGCGauUGUGGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 70337 0.66 0.979089
Target:  5'- gACG-CCGACgGCcgGGCGCCCGCu--- -3'
miRNA:   3'- -UGUaGGCUGgCGa-UUGUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 137410 0.66 0.978404
Target:  5'- gGCGUCCgcggacgccgcggaGACCGCgccGGCGCUCugGaACg -3'
miRNA:   3'- -UGUAGG--------------CUGGCGa--UUGUGGGugCaUG- -5'
10942 3' -53.3 NC_002794.1 + 27424 0.66 0.976987
Target:  5'- cGCGUCCGAaCGCacgGACGCacgaaccacuccccaCACGUGCc -3'
miRNA:   3'- -UGUAGGCUgGCGa--UUGUGg--------------GUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 117411 0.66 0.976744
Target:  5'- cCGUCgCGAcCCGCUGcaggaGCugCCGCGagGCg -3'
miRNA:   3'- uGUAG-GCU-GGCGAU-----UGugGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 36560 0.66 0.976744
Target:  5'- cCGUCCGcugcagacacgcGCCGCcgAGCAggcggUCCGCGUGCc -3'
miRNA:   3'- uGUAGGC------------UGGCGa-UUGU-----GGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 141556 0.66 0.976004
Target:  5'- -aAUCCGccacccgcgGCCGCggccuccgugaucaUGACGCCCGCGUcGCc -3'
miRNA:   3'- ugUAGGC---------UGGCG--------------AUUGUGGGUGCA-UG- -5'
10942 3' -53.3 NC_002794.1 + 55014 0.67 0.974211
Target:  5'- gGCGUCCG-CCGCc-GCGCCgcCGCGaGCa -3'
miRNA:   3'- -UGUAGGCuGGCGauUGUGG--GUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 115335 0.67 0.974211
Target:  5'- gGCGUCCgGGCCGCUcGGCACguCCAgGcgACa -3'
miRNA:   3'- -UGUAGG-CUGGCGA-UUGUG--GGUgCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 108401 0.67 0.974211
Target:  5'- gGC-UCCGGCgGC-GGCGCCCACcacgGCg -3'
miRNA:   3'- -UGuAGGCUGgCGaUUGUGGGUGca--UG- -5'
10942 3' -53.3 NC_002794.1 + 116997 0.67 0.971484
Target:  5'- cCGUCCG-CgGCgucuCGCCCAgGUACc -3'
miRNA:   3'- uGUAGGCuGgCGauu-GUGGGUgCAUG- -5'
10942 3' -53.3 NC_002794.1 + 103564 0.67 0.971484
Target:  5'- gGCGUCCGA-CGCcGugGCCgACGaGCa -3'
miRNA:   3'- -UGUAGGCUgGCGaUugUGGgUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 53978 0.67 0.971484
Target:  5'- cCGUCCGGCUGCcccGCGCCaGCGUc- -3'
miRNA:   3'- uGUAGGCUGGCGau-UGUGGgUGCAug -5'
10942 3' -53.3 NC_002794.1 + 183521 0.67 0.971484
Target:  5'- cAUGUCgCGGCCGUgcGCGCCC-CGUcCg -3'
miRNA:   3'- -UGUAG-GCUGGCGauUGUGGGuGCAuG- -5'
10942 3' -53.3 NC_002794.1 + 51378 0.67 0.968556
Target:  5'- cCGUCCGGCCgGCgacaGGCGCCCucCGgGCu -3'
miRNA:   3'- uGUAGGCUGG-CGa---UUGUGGGu-GCaUG- -5'
10942 3' -53.3 NC_002794.1 + 35532 0.67 0.968556
Target:  5'- uACAUCCuGcACCGCgagacccGGCGCUCGCGcGCg -3'
miRNA:   3'- -UGUAGG-C-UGGCGa------UUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 148318 0.67 0.968556
Target:  5'- gACggCCGACCGCgguuCgACCUGCGUugGCa -3'
miRNA:   3'- -UGuaGGCUGGCGauu-G-UGGGUGCA--UG- -5'
10942 3' -53.3 NC_002794.1 + 184830 0.67 0.968556
Target:  5'- cGCGUCCGGgCGCaccGCGCagcgaUACGUGCc -3'
miRNA:   3'- -UGUAGGCUgGCGau-UGUGg----GUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.