miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 106659 0.67 0.96542
Target:  5'- aACA-CCGGCCgggcggugucGCUGuGCugCUACGUACg -3'
miRNA:   3'- -UGUaGGCUGG----------CGAU-UGugGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 143039 0.67 0.965094
Target:  5'- gACGUgCagGGCCGCcagguugaggccgUAGCGCCCGCGgcgGCa -3'
miRNA:   3'- -UGUAgG--CUGGCG-------------AUUGUGGGUGCa--UG- -5'
10942 3' -53.3 NC_002794.1 + 110909 0.67 0.964767
Target:  5'- aGCcgCCG-CCGCccgaagagguCGCUCACGUACa -3'
miRNA:   3'- -UGuaGGCuGGCGauu-------GUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 83307 0.67 0.96207
Target:  5'- uACGUCgCGACC-CUcGGCACCCuGCGcUACg -3'
miRNA:   3'- -UGUAG-GCUGGcGA-UUGUGGG-UGC-AUG- -5'
10942 3' -53.3 NC_002794.1 + 23711 0.67 0.96207
Target:  5'- aGCGUcCCGaACCGCgcgcGGCggGCCCgACGUACc -3'
miRNA:   3'- -UGUA-GGC-UGGCGa---UUG--UGGG-UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 184018 0.67 0.96207
Target:  5'- cAUcgCCGGCCGCcacGGCACCgCGCGcaGCg -3'
miRNA:   3'- -UGuaGGCUGGCGa--UUGUGG-GUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 149988 0.67 0.96207
Target:  5'- ----gCGGCCGCUAuCugCCGCGcUGCu -3'
miRNA:   3'- uguagGCUGGCGAUuGugGGUGC-AUG- -5'
10942 3' -53.3 NC_002794.1 + 185338 0.67 0.96207
Target:  5'- cGCGU-CGACCGCUcGCGCgccgCCGCGaGCg -3'
miRNA:   3'- -UGUAgGCUGGCGAuUGUG----GGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 190131 0.68 0.958501
Target:  5'- -gGUCCG-CgCGCcGAUACCaCGCGUACu -3'
miRNA:   3'- ugUAGGCuG-GCGaUUGUGG-GUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 139267 0.68 0.958501
Target:  5'- aGCGUgCGACUGCguuuccgauacGACACCUggcggaGCGUGCg -3'
miRNA:   3'- -UGUAgGCUGGCGa----------UUGUGGG------UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 82386 0.68 0.958501
Target:  5'- cGCggCgGACCGC-GGCGCCCACaaACa -3'
miRNA:   3'- -UGuaGgCUGGCGaUUGUGGGUGcaUG- -5'
10942 3' -53.3 NC_002794.1 + 103781 0.68 0.958501
Target:  5'- uGCAucUCCGGCgGCUGagcuugagguGCGCCUGCG-ACg -3'
miRNA:   3'- -UGU--AGGCUGgCGAU----------UGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 119519 0.68 0.958501
Target:  5'- cGCGgagCCGGCCGCgGAC-CCCuCGUccGCg -3'
miRNA:   3'- -UGUa--GGCUGGCGaUUGuGGGuGCA--UG- -5'
10942 3' -53.3 NC_002794.1 + 81227 0.68 0.958501
Target:  5'- uCGUCCccccgGGCCGCgcGCGCaCCACGgACg -3'
miRNA:   3'- uGUAGG-----CUGGCGauUGUG-GGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 126090 0.68 0.954709
Target:  5'- uGCggCCGACCGaCUGGCuuccgGCCCugG-GCg -3'
miRNA:   3'- -UGuaGGCUGGC-GAUUG-----UGGGugCaUG- -5'
10942 3' -53.3 NC_002794.1 + 69828 0.68 0.954709
Target:  5'- gGCGUCCGcccgguCCGCUGGCucaccGCCuCGCGaACa -3'
miRNA:   3'- -UGUAGGCu-----GGCGAUUG-----UGG-GUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 75667 0.68 0.954709
Target:  5'- cCGUCCG-CCGCUAcACGCUCGCcgacUACa -3'
miRNA:   3'- uGUAGGCuGGCGAU-UGUGGGUGc---AUG- -5'
10942 3' -53.3 NC_002794.1 + 14767 0.68 0.950689
Target:  5'- cCGUCgaGGCCGCUGAgGCCgGCGa-- -3'
miRNA:   3'- uGUAGg-CUGGCGAUUgUGGgUGCaug -5'
10942 3' -53.3 NC_002794.1 + 184405 0.68 0.950689
Target:  5'- cACGUCCGACagCGCgcuCACCgGCagGUGCa -3'
miRNA:   3'- -UGUAGGCUG--GCGauuGUGGgUG--CAUG- -5'
10942 3' -53.3 NC_002794.1 + 56570 0.68 0.946437
Target:  5'- cGCcgCCGACCGCccgcgccgcGGCGCCCGCc--- -3'
miRNA:   3'- -UGuaGGCUGGCGa--------UUGUGGGUGcaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.