Results 61 - 80 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10942 | 3' | -53.3 | NC_002794.1 | + | 56570 | 0.68 | 0.946437 |
Target: 5'- cGCcgCCGACCGCccgcgccgcGGCGCCCGCc--- -3' miRNA: 3'- -UGuaGGCUGGCGa--------UUGUGGGUGcaug -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 89966 | 0.68 | 0.946437 |
Target: 5'- gGCGUUCgGACCGUgguGCGCCgGCGUuCg -3' miRNA: 3'- -UGUAGG-CUGGCGau-UGUGGgUGCAuG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 52603 | 0.68 | 0.946437 |
Target: 5'- gACGUCCGcCCGa-GACGCCCGCccgACc -3' miRNA: 3'- -UGUAGGCuGGCgaUUGUGGGUGca-UG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 126953 | 0.68 | 0.945999 |
Target: 5'- uGCGUUugagcgaCGACCGCgagAGCGgCCGCGUGu -3' miRNA: 3'- -UGUAG-------GCUGGCGa--UUGUgGGUGCAUg -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 27602 | 0.68 | 0.941951 |
Target: 5'- cCAUCCGACCGUc--CACCCGguCGgACg -3' miRNA: 3'- uGUAGGCUGGCGauuGUGGGU--GCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 85002 | 0.68 | 0.941951 |
Target: 5'- ---cCCGACCGCc-GCGCUCGgGUGCc -3' miRNA: 3'- uguaGGCUGGCGauUGUGGGUgCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 77293 | 0.68 | 0.941951 |
Target: 5'- uCAUCCGGCUGCUgcccGAC-CgCCACGaACg -3' miRNA: 3'- uGUAGGCUGGCGA----UUGuG-GGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 130446 | 0.68 | 0.941489 |
Target: 5'- gGCGUCCGugUugggcggcgaggcGCUGGCGgCUUGCGUGCg -3' miRNA: 3'- -UGUAGGCugG-------------CGAUUGU-GGGUGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 11849 | 0.69 | 0.932266 |
Target: 5'- gACcUCCGACCGCcGGCGacgaccgcccgcCCCGCG-ACg -3' miRNA: 3'- -UGuAGGCUGGCGaUUGU------------GGGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 190876 | 0.69 | 0.927065 |
Target: 5'- uACAcCCGGCUGCcguGC-CCCAgGUACa -3' miRNA: 3'- -UGUaGGCUGGCGau-UGuGGGUgCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 39801 | 0.69 | 0.921623 |
Target: 5'- gGCG-CCGACCGUUuuuCGCCCGCa--- -3' miRNA: 3'- -UGUaGGCUGGCGAuu-GUGGGUGcaug -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 118686 | 0.69 | 0.915943 |
Target: 5'- cGCcgCCGGCgGC-AGCGCCCAgGaGCg -3' miRNA: 3'- -UGuaGGCUGgCGaUUGUGGGUgCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 70689 | 0.69 | 0.915943 |
Target: 5'- gACGUCCugucGCCGCUGGggguccCACCCAC-UGCg -3' miRNA: 3'- -UGUAGGc---UGGCGAUU------GUGGGUGcAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 18618 | 0.69 | 0.915943 |
Target: 5'- gGCA-CCGGCCGCcccuccGACGCCCGCu--- -3' miRNA: 3'- -UGUaGGCUGGCGa-----UUGUGGGUGcaug -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 153662 | 0.69 | 0.915943 |
Target: 5'- cGCGUCCGGCCGCcgguugUGAgGCUCgACGcGCg -3' miRNA: 3'- -UGUAGGCUGGCG------AUUgUGGG-UGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 11983 | 0.69 | 0.915362 |
Target: 5'- gGCGUCCGGCgGCUggUugCUgcuguguggacugAUGUGCg -3' miRNA: 3'- -UGUAGGCUGgCGAuuGugGG-------------UGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 86906 | 0.7 | 0.903867 |
Target: 5'- gGCcgCCGAcCCGgUGACGCCCgugGCGgGCa -3' miRNA: 3'- -UGuaGGCU-GGCgAUUGUGGG---UGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 82784 | 0.7 | 0.903867 |
Target: 5'- cGCAaCCGACCGCc-GCGUCCACGcGCg -3' miRNA: 3'- -UGUaGGCUGGCGauUGUGGGUGCaUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 150725 | 0.7 | 0.890854 |
Target: 5'- gACGUgCGGCgGCUGACcgcguuCCCguGCGUGCa -3' miRNA: 3'- -UGUAgGCUGgCGAUUGu-----GGG--UGCAUG- -5' |
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10942 | 3' | -53.3 | NC_002794.1 | + | 194503 | 0.7 | 0.884004 |
Target: 5'- cGCGcCCGGcCCGCg---GCCCGCGUGCc -3' miRNA: 3'- -UGUaGGCU-GGCGauugUGGGUGCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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