miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 851 0.74 0.718796
Target:  5'- uGCGUUCGGCCcaGCgcGCGCCCGCGagGCg -3'
miRNA:   3'- -UGUAGGCUGG--CGauUGUGGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 3737 0.68 0.946437
Target:  5'- gACAUCgCGACCGC-AACGCgcgUCACGgcgggGCg -3'
miRNA:   3'- -UGUAG-GCUGGCGaUUGUG---GGUGCa----UG- -5'
10942 3' -53.3 NC_002794.1 + 11849 0.69 0.932266
Target:  5'- gACcUCCGACCGCcGGCGacgaccgcccgcCCCGCG-ACg -3'
miRNA:   3'- -UGuAGGCUGGCGaUUGU------------GGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 11983 0.69 0.915362
Target:  5'- gGCGUCCGGCgGCUggUugCUgcuguguggacugAUGUGCg -3'
miRNA:   3'- -UGUAGGCUGgCGAuuGugGG-------------UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 12620 0.71 0.854414
Target:  5'- cGCGUCUggGGCCGCUucgagcACACCUACG-ACg -3'
miRNA:   3'- -UGUAGG--CUGGCGAu-----UGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 13977 0.66 0.979089
Target:  5'- gACGUUcgcugCGGCCGCU-AUGCCCguuacaACGUGCa -3'
miRNA:   3'- -UGUAG-----GCUGGCGAuUGUGGG------UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 14767 0.68 0.950689
Target:  5'- cCGUCgaGGCCGCUGAgGCCgGCGa-- -3'
miRNA:   3'- uGUAGg-CUGGCGAUUgUGGgUGCaug -5'
10942 3' -53.3 NC_002794.1 + 16343 0.71 0.854414
Target:  5'- gGCA-CCGACgacgucggCGCcacccGCACCCGCGUGCa -3'
miRNA:   3'- -UGUaGGCUG--------GCGau---UGUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 18618 0.69 0.915943
Target:  5'- gGCA-CCGGCCGCcccuccGACGCCCGCu--- -3'
miRNA:   3'- -UGUaGGCUGGCGa-----UUGUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 19301 0.66 0.981253
Target:  5'- uCGUCgCG-UCGCUGAcCGCCCACGccGCg -3'
miRNA:   3'- uGUAG-GCuGGCGAUU-GUGGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 19865 0.72 0.812948
Target:  5'- cGCAcUCGACCGUcuACACCUGCGUGg -3'
miRNA:   3'- -UGUaGGCUGGCGauUGUGGGUGCAUg -5'
10942 3' -53.3 NC_002794.1 + 19891 0.66 0.986746
Target:  5'- ---gCCGACCGCUGccGCgagcacgaccugACCCGCcUGCa -3'
miRNA:   3'- uguaGGCUGGCGAU--UG------------UGGGUGcAUG- -5'
10942 3' -53.3 NC_002794.1 + 21956 0.66 0.983246
Target:  5'- gGCcgUCGGCCGCUcccgcGGCGCCguCGUcuccGCg -3'
miRNA:   3'- -UGuaGGCUGGCGA-----UUGUGGguGCA----UG- -5'
10942 3' -53.3 NC_002794.1 + 23711 0.67 0.96207
Target:  5'- aGCGUcCCGaACCGCgcgcGGCggGCCCgACGUACc -3'
miRNA:   3'- -UGUA-GGC-UGGCGa---UUG--UGGG-UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 27424 0.66 0.976987
Target:  5'- cGCGUCCGAaCGCacgGACGCacgaaccacuccccaCACGUGCc -3'
miRNA:   3'- -UGUAGGCUgGCGa--UUGUGg--------------GUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 27602 0.68 0.941951
Target:  5'- cCAUCCGACCGUc--CACCCGguCGgACg -3'
miRNA:   3'- uGUAGGCUGGCGauuGUGGGU--GCaUG- -5'
10942 3' -53.3 NC_002794.1 + 28727 0.66 0.985074
Target:  5'- cCGUCCGACCGUguccccGAgGCCCGucgcucCGUAg -3'
miRNA:   3'- uGUAGGCUGGCGa-----UUgUGGGU------GCAUg -5'
10942 3' -53.3 NC_002794.1 + 35064 0.74 0.688679
Target:  5'- gACcgCCG-CUGCgugGGCGCCCugGUGCc -3'
miRNA:   3'- -UGuaGGCuGGCGa--UUGUGGGugCAUG- -5'
10942 3' -53.3 NC_002794.1 + 35532 0.67 0.968556
Target:  5'- uACAUCCuGcACCGCgagacccGGCGCUCGCGcGCg -3'
miRNA:   3'- -UGUAGG-C-UGGCGa------UUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 36560 0.66 0.976744
Target:  5'- cCGUCCGcugcagacacgcGCCGCcgAGCAggcggUCCGCGUGCc -3'
miRNA:   3'- uGUAGGC------------UGGCGa-UUGU-----GGGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.