miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 39801 0.69 0.921623
Target:  5'- gGCG-CCGACCGUUuuuCGCCCGCa--- -3'
miRNA:   3'- -UGUaGGCUGGCGAuu-GUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 41871 0.72 0.821602
Target:  5'- gGCAgggCCGGgCGCUGcCACgCCACGUAg -3'
miRNA:   3'- -UGUa--GGCUgGCGAUuGUG-GGUGCAUg -5'
10942 3' -53.3 NC_002794.1 + 51378 0.67 0.968556
Target:  5'- cCGUCCGGCCgGCgacaGGCGCCCucCGgGCu -3'
miRNA:   3'- uGUAGGCUGG-CGa---UUGUGGGu-GCaUG- -5'
10942 3' -53.3 NC_002794.1 + 52603 0.68 0.946437
Target:  5'- gACGUCCGcCCGa-GACGCCCGCccgACc -3'
miRNA:   3'- -UGUAGGCuGGCgaUUGUGGGUGca-UG- -5'
10942 3' -53.3 NC_002794.1 + 53755 0.72 0.821602
Target:  5'- uGCcgCCG-CCGCUgccggcggcggGACGCCCGCG-ACg -3'
miRNA:   3'- -UGuaGGCuGGCGA-----------UUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 53978 0.67 0.971484
Target:  5'- cCGUCCGGCUGCcccGCGCCaGCGUc- -3'
miRNA:   3'- uGUAGGCUGGCGau-UGUGGgUGCAug -5'
10942 3' -53.3 NC_002794.1 + 55014 0.67 0.974211
Target:  5'- gGCGUCCG-CCGCc-GCGCCgcCGCGaGCa -3'
miRNA:   3'- -UGUAGGCuGGCGauUGUGG--GUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 56570 0.68 0.946437
Target:  5'- cGCcgCCGACCGCccgcgccgcGGCGCCCGCc--- -3'
miRNA:   3'- -UGuaGGCUGGCGa--------UUGUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 57393 0.66 0.979089
Target:  5'- uACGUC--ACCgGCUccGGCGCCCGCGUGg -3'
miRNA:   3'- -UGUAGgcUGG-CGA--UUGUGGGUGCAUg -5'
10942 3' -53.3 NC_002794.1 + 58829 0.74 0.698777
Target:  5'- aACcgCCuGCCGCgcgagGACGCCgACGUGCa -3'
miRNA:   3'- -UGuaGGcUGGCGa----UUGUGGgUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 59467 0.66 0.985761
Target:  5'- gACAUCCG-CCGCUAccucgaggaguucccGCACuaccugcgCCACG-ACg -3'
miRNA:   3'- -UGUAGGCuGGCGAU---------------UGUG--------GGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 59893 0.73 0.74921
Target:  5'- cGCAcCUGcGCCGCgugcgcagcgacaugGGCGCCCGCGUGCa -3'
miRNA:   3'- -UGUaGGC-UGGCGa--------------UUGUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 60018 0.66 0.983246
Target:  5'- cGCA-CCGACCuGCUcGACGCCgACGc-- -3'
miRNA:   3'- -UGUaGGCUGG-CGA-UUGUGGgUGCaug -5'
10942 3' -53.3 NC_002794.1 + 68197 0.71 0.862129
Target:  5'- -gAUCCGGCCGCUcuacuGGCAgCgCugGUACc -3'
miRNA:   3'- ugUAGGCUGGCGA-----UUGUgG-GugCAUG- -5'
10942 3' -53.3 NC_002794.1 + 69130 0.74 0.708819
Target:  5'- cGCcgCCGACCGCcGGCcaagccgcuucGCCCACGUucACg -3'
miRNA:   3'- -UGuaGGCUGGCGaUUG-----------UGGGUGCA--UG- -5'
10942 3' -53.3 NC_002794.1 + 69828 0.68 0.954709
Target:  5'- gGCGUCCGcccgguCCGCUGGCucaccGCCuCGCGaACa -3'
miRNA:   3'- -UGUAGGCu-----GGCGAUUG-----UGG-GUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 70337 0.66 0.979089
Target:  5'- gACG-CCGACgGCcgGGCGCCCGCu--- -3'
miRNA:   3'- -UGUaGGCUGgCGa-UUGUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 70689 0.69 0.915943
Target:  5'- gACGUCCugucGCCGCUGGggguccCACCCAC-UGCg -3'
miRNA:   3'- -UGUAGGc---UGGCGAUU------GUGGGUGcAUG- -5'
10942 3' -53.3 NC_002794.1 + 71468 0.66 0.986746
Target:  5'- cACGUCCGACa--UGACGCaguCGUACg -3'
miRNA:   3'- -UGUAGGCUGgcgAUUGUGgguGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 72047 0.74 0.718796
Target:  5'- -uGUUCG-CCGCUGACccgcagccgguuGCCCGCGUGCc -3'
miRNA:   3'- ugUAGGCuGGCGAUUG------------UGGGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.