miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 75667 0.68 0.954709
Target:  5'- cCGUCCG-CCGCUAcACGCUCGCcgacUACa -3'
miRNA:   3'- uGUAGGCuGGCGAU-UGUGGGUGc---AUG- -5'
10942 3' -53.3 NC_002794.1 + 77293 0.68 0.941951
Target:  5'- uCAUCCGGCUGCUgcccGAC-CgCCACGaACg -3'
miRNA:   3'- uGUAGGCUGGCGA----UUGuG-GGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 79783 0.72 0.821602
Target:  5'- -gGUUCGcCCGCU-ACGCCCGCGaGCg -3'
miRNA:   3'- ugUAGGCuGGCGAuUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 81227 0.68 0.958501
Target:  5'- uCGUCCccccgGGCCGCgcGCGCaCCACGgACg -3'
miRNA:   3'- uGUAGG-----CUGGCGauUGUG-GGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 82008 0.76 0.616134
Target:  5'- gACG-CCGGCCGCUGACGCCgaaacccgacgauCGCGUGg -3'
miRNA:   3'- -UGUaGGCUGGCGAUUGUGG-------------GUGCAUg -5'
10942 3' -53.3 NC_002794.1 + 82386 0.68 0.958501
Target:  5'- cGCggCgGACCGC-GGCGCCCACaaACa -3'
miRNA:   3'- -UGuaGgCUGGCGaUUGUGGGUGcaUG- -5'
10942 3' -53.3 NC_002794.1 + 82784 0.7 0.903867
Target:  5'- cGCAaCCGACCGCc-GCGUCCACGcGCg -3'
miRNA:   3'- -UGUaGGCUGGCGauUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 83307 0.67 0.96207
Target:  5'- uACGUCgCGACC-CUcGGCACCCuGCGcUACg -3'
miRNA:   3'- -UGUAG-GCUGGcGA-UUGUGGG-UGC-AUG- -5'
10942 3' -53.3 NC_002794.1 + 84980 0.66 0.985074
Target:  5'- ---cCCGGCCGCgaAAC-CCCACGa-- -3'
miRNA:   3'- uguaGGCUGGCGa-UUGuGGGUGCaug -5'
10942 3' -53.3 NC_002794.1 + 85002 0.68 0.941951
Target:  5'- ---cCCGACCGCc-GCGCUCGgGUGCc -3'
miRNA:   3'- uguaGGCUGGCGauUGUGGGUgCAUG- -5'
10942 3' -53.3 NC_002794.1 + 86002 0.75 0.627405
Target:  5'- gACGguUCCGAacCCGCUGGCGCCgACcGUGCg -3'
miRNA:   3'- -UGU--AGGCU--GGCGAUUGUGGgUG-CAUG- -5'
10942 3' -53.3 NC_002794.1 + 86906 0.7 0.903867
Target:  5'- gGCcgCCGAcCCGgUGACGCCCgugGCGgGCa -3'
miRNA:   3'- -UGuaGGCU-GGCgAUUGUGGG---UGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 89966 0.68 0.946437
Target:  5'- gGCGUUCgGACCGUgguGCGCCgGCGUuCg -3'
miRNA:   3'- -UGUAGG-CUGGCGau-UGUGGgUGCAuG- -5'
10942 3' -53.3 NC_002794.1 + 90676 0.66 0.986746
Target:  5'- ---gCCGGCCGCgUGGCuguucguguGCCCGCGgcaggACg -3'
miRNA:   3'- uguaGGCUGGCG-AUUG---------UGGGUGCa----UG- -5'
10942 3' -53.3 NC_002794.1 + 95032 0.71 0.862129
Target:  5'- gGCAUCUcGCCGgUGgcgGCGCCCgagGCGUACg -3'
miRNA:   3'- -UGUAGGcUGGCgAU---UGUGGG---UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 100307 0.74 0.718796
Target:  5'- cGCcUCCG-CCGCUGGCACgCGCGgccgGCg -3'
miRNA:   3'- -UGuAGGCuGGCGAUUGUGgGUGCa---UG- -5'
10942 3' -53.3 NC_002794.1 + 100791 0.79 0.440902
Target:  5'- uGCGguUCgCGGCCGCUucuGCGCCUACGUGCc -3'
miRNA:   3'- -UGU--AG-GCUGGCGAu--UGUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 102542 0.66 0.983246
Target:  5'- --cUCgGGCCGCguggaGACggcgGCCCugGUGCu -3'
miRNA:   3'- uguAGgCUGGCGa----UUG----UGGGugCAUG- -5'
10942 3' -53.3 NC_002794.1 + 103564 0.67 0.971484
Target:  5'- gGCGUCCGA-CGCcGugGCCgACGaGCa -3'
miRNA:   3'- -UGUAGGCUgGCGaUugUGGgUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 103781 0.68 0.958501
Target:  5'- uGCAucUCCGGCgGCUGagcuugagguGCGCCUGCG-ACg -3'
miRNA:   3'- -UGU--AGGCUGgCGAU----------UGUGGGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.