miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 195112 0.66 0.979089
Target:  5'- gGCGUCuCGugCGCccGCggcgcgcgcggGCUCGCGUACa -3'
miRNA:   3'- -UGUAG-GCugGCGauUG-----------UGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 194728 0.74 0.728699
Target:  5'- cGCGUCaCGAacuccacgcaCCGCUGcaGCACCCACGgcgACu -3'
miRNA:   3'- -UGUAG-GCU----------GGCGAU--UGUGGGUGCa--UG- -5'
10942 3' -53.3 NC_002794.1 + 194503 0.7 0.884004
Target:  5'- cGCGcCCGGcCCGCg---GCCCGCGUGCc -3'
miRNA:   3'- -UGUaGGCU-GGCGauugUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 194138 0.71 0.862129
Target:  5'- gGCAg-CGGCCGCagcAGCGCCCGCGaGCc -3'
miRNA:   3'- -UGUagGCUGGCGa--UUGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 193440 0.71 0.869636
Target:  5'- cCGUCCGGCaCGC---CGCCCACGcACa -3'
miRNA:   3'- uGUAGGCUG-GCGauuGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 190876 0.69 0.927065
Target:  5'- uACAcCCGGCUGCcguGC-CCCAgGUACa -3'
miRNA:   3'- -UGUaGGCUGGCGau-UGuGGGUgCAUG- -5'
10942 3' -53.3 NC_002794.1 + 190200 0.66 0.986746
Target:  5'- cGCGcUCCagcGCCGCgcGCACCCGCcggGCg -3'
miRNA:   3'- -UGU-AGGc--UGGCGauUGUGGGUGca-UG- -5'
10942 3' -53.3 NC_002794.1 + 190131 0.68 0.958501
Target:  5'- -gGUCCG-CgCGCcGAUACCaCGCGUACu -3'
miRNA:   3'- ugUAGGCuG-GCGaUUGUGG-GUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 188707 0.72 0.812948
Target:  5'- ---cCCGugCGCacGCACaCCGCGUACa -3'
miRNA:   3'- uguaGGCugGCGauUGUG-GGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 187131 0.66 0.979089
Target:  5'- uACAcCCGcCCGUagcCGCCCAgGUACa -3'
miRNA:   3'- -UGUaGGCuGGCGauuGUGGGUgCAUG- -5'
10942 3' -53.3 NC_002794.1 + 186648 0.77 0.546148
Target:  5'- cGCGggUCGGCCGCgcGCACCC-CGUACa -3'
miRNA:   3'- -UGUa-GGCUGGCGauUGUGGGuGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 185338 0.67 0.96207
Target:  5'- cGCGU-CGACCGCUcGCGCgccgCCGCGaGCg -3'
miRNA:   3'- -UGUAgGCUGGCGAuUGUG----GGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 184830 0.67 0.968556
Target:  5'- cGCGUCCGGgCGCaccGCGCagcgaUACGUGCc -3'
miRNA:   3'- -UGUAGGCUgGCGau-UGUGg----GUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 184442 0.75 0.66835
Target:  5'- uACAUCUGagcgcGCCGCUGcCGCCCGCGgGCc -3'
miRNA:   3'- -UGUAGGC-----UGGCGAUuGUGGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 184405 0.68 0.950689
Target:  5'- cACGUCCGACagCGCgcuCACCgGCagGUGCa -3'
miRNA:   3'- -UGUAGGCUG--GCGauuGUGGgUG--CAUG- -5'
10942 3' -53.3 NC_002794.1 + 184018 0.67 0.96207
Target:  5'- cAUcgCCGGCCGCcacGGCACCgCGCGcaGCg -3'
miRNA:   3'- -UGuaGGCUGGCGa--UUGUGG-GUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 183521 0.67 0.971484
Target:  5'- cAUGUCgCGGCCGUgcGCGCCC-CGUcCg -3'
miRNA:   3'- -UGUAG-GCUGGCGauUGUGGGuGCAuG- -5'
10942 3' -53.3 NC_002794.1 + 183447 0.66 0.983246
Target:  5'- gGCGcCCGccACCGCcGGCGCCCGCccGCc -3'
miRNA:   3'- -UGUaGGC--UGGCGaUUGUGGGUGcaUG- -5'
10942 3' -53.3 NC_002794.1 + 181748 0.66 0.985074
Target:  5'- aGCggCCGGCCagcccGCUGACGCCgAUG-GCg -3'
miRNA:   3'- -UGuaGGCUGG-----CGAUUGUGGgUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 180678 0.73 0.77677
Target:  5'- aACucgCCGGCCGCUcccGGCGCCCgGCGgGCg -3'
miRNA:   3'- -UGua-GGCUGGCGA---UUGUGGG-UGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.