miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 172045 0.7 0.884004
Target:  5'- cACAUUCGACUgggguacgagauGCUGugGCUCAUGUAUa -3'
miRNA:   3'- -UGUAGGCUGG------------CGAUugUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 153662 0.69 0.915943
Target:  5'- cGCGUCCGGCCGCcgguugUGAgGCUCgACGcGCg -3'
miRNA:   3'- -UGUAGGCUGGCG------AUUgUGGG-UGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 153394 0.71 0.869636
Target:  5'- -uGUCCGAUCGCgAGCugUCGCGaGCg -3'
miRNA:   3'- ugUAGGCUGGCGaUUGugGGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 150725 0.7 0.890854
Target:  5'- gACGUgCGGCgGCUGACcgcguuCCCguGCGUGCa -3'
miRNA:   3'- -UGUAgGCUGgCGAUUGu-----GGG--UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 149988 0.67 0.96207
Target:  5'- ----gCGGCCGCUAuCugCCGCGcUGCu -3'
miRNA:   3'- uguagGCUGGCGAUuGugGGUGC-AUG- -5'
10942 3' -53.3 NC_002794.1 + 148318 0.67 0.968556
Target:  5'- gACggCCGACCGCgguuCgACCUGCGUugGCa -3'
miRNA:   3'- -UGuaGGCUGGCGauu-G-UGGGUGCA--UG- -5'
10942 3' -53.3 NC_002794.1 + 146402 0.66 0.983246
Target:  5'- cCGUCCGAUCGUc--CGCCCGCa--- -3'
miRNA:   3'- uGUAGGCUGGCGauuGUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 144444 0.66 0.979089
Target:  5'- uGCAgCCGugCGC--GCACCUGCGcgACu -3'
miRNA:   3'- -UGUaGGCugGCGauUGUGGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 143039 0.67 0.965094
Target:  5'- gACGUgCagGGCCGCcagguugaggccgUAGCGCCCGCGgcgGCa -3'
miRNA:   3'- -UGUAgG--CUGGCG-------------AUUGUGGGUGCa--UG- -5'
10942 3' -53.3 NC_002794.1 + 141556 0.66 0.976004
Target:  5'- -aAUCCGccacccgcgGCCGCggccuccgugaucaUGACGCCCGCGUcGCc -3'
miRNA:   3'- ugUAGGC---------UGGCG--------------AUUGUGGGUGCA-UG- -5'
10942 3' -53.3 NC_002794.1 + 139267 0.68 0.958501
Target:  5'- aGCGUgCGACUGCguuuccgauacGACACCUggcggaGCGUGCg -3'
miRNA:   3'- -UGUAgGCUGGCGa----------UUGUGGG------UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 137410 0.66 0.978404
Target:  5'- gGCGUCCgcggacgccgcggaGACCGCgccGGCGCUCugGaACg -3'
miRNA:   3'- -UGUAGG--------------CUGGCGa--UUGUGGGugCaUG- -5'
10942 3' -53.3 NC_002794.1 + 137170 0.66 0.986746
Target:  5'- ---cCCGGCCGCUcgcuCGCCCGCcccACa -3'
miRNA:   3'- uguaGGCUGGCGAuu--GUGGGUGca-UG- -5'
10942 3' -53.3 NC_002794.1 + 136001 0.73 0.73754
Target:  5'- -uGUCCGGguccaguCCGCUGGuCACUCGCGUGCc -3'
miRNA:   3'- ugUAGGCU-------GGCGAUU-GUGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 130446 0.68 0.941489
Target:  5'- gGCGUCCGugUugggcggcgaggcGCUGGCGgCUUGCGUGCg -3'
miRNA:   3'- -UGUAGGCugG-------------CGAUUGU-GGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 129712 0.72 0.786031
Target:  5'- gGCAUCCGGCCgGUUAACugUCugG-GCg -3'
miRNA:   3'- -UGUAGGCUGG-CGAUUGugGGugCaUG- -5'
10942 3' -53.3 NC_002794.1 + 126953 0.68 0.945999
Target:  5'- uGCGUUugagcgaCGACCGCgagAGCGgCCGCGUGu -3'
miRNA:   3'- -UGUAG-------GCUGGCGa--UUGUgGGUGCAUg -5'
10942 3' -53.3 NC_002794.1 + 126090 0.68 0.954709
Target:  5'- uGCggCCGACCGaCUGGCuuccgGCCCugG-GCg -3'
miRNA:   3'- -UGuaGGCUGGC-GAUUG-----UGGGugCaUG- -5'
10942 3' -53.3 NC_002794.1 + 124782 0.66 0.979089
Target:  5'- gACGUCCaACCGCgaccUGACcaaguUCUACGUGCa -3'
miRNA:   3'- -UGUAGGcUGGCG----AUUGu----GGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 119519 0.68 0.958501
Target:  5'- cGCGgagCCGGCCGCgGAC-CCCuCGUccGCg -3'
miRNA:   3'- -UGUa--GGCUGGCGaUUGuGGGuGCA--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.