miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 19891 0.66 0.986746
Target:  5'- ---gCCGACCGCUGccGCgagcacgaccugACCCGCcUGCa -3'
miRNA:   3'- uguaGGCUGGCGAU--UG------------UGGGUGcAUG- -5'
10942 3' -53.3 NC_002794.1 + 118660 0.66 0.985074
Target:  5'- uCGUCCGugGgCGC-GACGCCCGCGg-- -3'
miRNA:   3'- uGUAGGC--UgGCGaUUGUGGGUGCaug -5'
10942 3' -53.3 NC_002794.1 + 90676 0.66 0.986746
Target:  5'- ---gCCGGCCGCgUGGCuguucguguGCCCGCGgcaggACg -3'
miRNA:   3'- uguaGGCUGGCG-AUUG---------UGGGUGCa----UG- -5'
10942 3' -53.3 NC_002794.1 + 137170 0.66 0.986746
Target:  5'- ---cCCGGCCGCUcgcuCGCCCGCcccACa -3'
miRNA:   3'- uguaGGCUGGCGAuu--GUGGGUGca-UG- -5'
10942 3' -53.3 NC_002794.1 + 71468 0.66 0.986746
Target:  5'- cACGUCCGACa--UGACGCaguCGUACg -3'
miRNA:   3'- -UGUAGGCUGgcgAUUGUGgguGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 183447 0.66 0.983246
Target:  5'- gGCGcCCGccACCGCcGGCGCCCGCccGCc -3'
miRNA:   3'- -UGUaGGC--UGGCGaUUGUGGGUGcaUG- -5'
10942 3' -53.3 NC_002794.1 + 21956 0.66 0.983246
Target:  5'- gGCcgUCGGCCGCUcccgcGGCGCCguCGUcuccGCg -3'
miRNA:   3'- -UGuaGGCUGGCGA-----UUGUGGguGCA----UG- -5'
10942 3' -53.3 NC_002794.1 + 103564 0.67 0.971484
Target:  5'- gGCGUCCGA-CGCcGugGCCgACGaGCa -3'
miRNA:   3'- -UGUAGGCUgGCGaUugUGGgUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 117411 0.66 0.976744
Target:  5'- cCGUCgCGAcCCGCUGcaggaGCugCCGCGagGCg -3'
miRNA:   3'- uGUAG-GCU-GGCGAU-----UGugGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 36560 0.66 0.976744
Target:  5'- cCGUCCGcugcagacacgcGCCGCcgAGCAggcggUCCGCGUGCc -3'
miRNA:   3'- uGUAGGC------------UGGCGa-UUGU-----GGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 27424 0.66 0.976987
Target:  5'- cGCGUCCGAaCGCacgGACGCacgaaccacuccccaCACGUGCc -3'
miRNA:   3'- -UGUAGGCUgGCGa--UUGUGg--------------GUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 137410 0.66 0.978404
Target:  5'- gGCGUCCgcggacgccgcggaGACCGCgccGGCGCUCugGaACg -3'
miRNA:   3'- -UGUAGG--------------CUGGCGa--UUGUGGGugCaUG- -5'
10942 3' -53.3 NC_002794.1 + 13977 0.66 0.979089
Target:  5'- gACGUUcgcugCGGCCGCU-AUGCCCguuacaACGUGCa -3'
miRNA:   3'- -UGUAG-----GCUGGCGAuUGUGGG------UGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 57393 0.66 0.979089
Target:  5'- uACGUC--ACCgGCUccGGCGCCCGCGUGg -3'
miRNA:   3'- -UGUAGgcUGG-CGA--UUGUGGGUGCAUg -5'
10942 3' -53.3 NC_002794.1 + 187131 0.66 0.979089
Target:  5'- uACAcCCGcCCGUagcCGCCCAgGUACa -3'
miRNA:   3'- -UGUaGGCuGGCGauuGUGGGUgCAUG- -5'
10942 3' -53.3 NC_002794.1 + 124782 0.66 0.979089
Target:  5'- gACGUCCaACCGCgaccUGACcaaguUCUACGUGCa -3'
miRNA:   3'- -UGUAGGcUGGCG----AUUGu----GGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 195112 0.66 0.979089
Target:  5'- gGCGUCuCGugCGCccGCggcgcgcgcggGCUCGCGUACa -3'
miRNA:   3'- -UGUAG-GCugGCGauUG-----------UGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 144444 0.66 0.979089
Target:  5'- uGCAgCCGugCGC--GCACCUGCGcgACu -3'
miRNA:   3'- -UGUaGGCugGCGauUGUGGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 70337 0.66 0.979089
Target:  5'- gACG-CCGACgGCcgGGCGCCCGCu--- -3'
miRNA:   3'- -UGUaGGCUGgCGa-UUGUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 19301 0.66 0.981253
Target:  5'- uCGUCgCG-UCGCUGAcCGCCCACGccGCg -3'
miRNA:   3'- uGUAG-GCuGGCGAUU-GUGGGUGCa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.