miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 5' -57.6 NC_002794.1 + 179097 0.66 0.925163
Target:  5'- cGAgGaacCGUCCGGUCGuccgcgguCCGGGCGc -3'
miRNA:   3'- aUUgCgcaGCAGGCCAGCu-------GGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 91061 0.66 0.925163
Target:  5'- -cGCGCGUCGUCauguacgccgUGGUgGGCuaCGGGCu -3'
miRNA:   3'- auUGCGCAGCAG----------GCCAgCUG--GCCUGc -5'
10942 5' -57.6 NC_002794.1 + 105477 0.66 0.924646
Target:  5'- cGACGagcCGUCGucUCCGGUCGuggagccgccgccGCCGGuCGc -3'
miRNA:   3'- aUUGC---GCAGC--AGGCCAGC-------------UGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 131016 0.66 0.919886
Target:  5'- -cACGgGUCGg-UGGUCGugCGGcGCGg -3'
miRNA:   3'- auUGCgCAGCagGCCAGCugGCC-UGC- -5'
10942 5' -57.6 NC_002794.1 + 140956 0.66 0.919886
Target:  5'- -cGCGCGgagugCGUgaGGUUGGCCGaGCGg -3'
miRNA:   3'- auUGCGCa----GCAggCCAGCUGGCcUGC- -5'
10942 5' -57.6 NC_002794.1 + 31719 0.66 0.919886
Target:  5'- -uGCGCGggaucCCGGaugaGACCGGGCGg -3'
miRNA:   3'- auUGCGCagca-GGCCag--CUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 133895 0.66 0.914391
Target:  5'- gGGCuGCGUCGUCUGGauUCGGucuaCGaGACGg -3'
miRNA:   3'- aUUG-CGCAGCAGGCC--AGCUg---GC-CUGC- -5'
10942 5' -57.6 NC_002794.1 + 36888 0.66 0.914391
Target:  5'- gUAGCGCGUgcagagCGUCCagaGGUCGcggcGCCGGccccGCGa -3'
miRNA:   3'- -AUUGCGCA------GCAGG---CCAGC----UGGCC----UGC- -5'
10942 5' -57.6 NC_002794.1 + 120119 0.66 0.914391
Target:  5'- gUGACGCG-CGcgaCGG-CGACCggGGACGg -3'
miRNA:   3'- -AUUGCGCaGCag-GCCaGCUGG--CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 19532 0.66 0.914391
Target:  5'- cGGCGCGgcgCGgcccgCCGGugUCGGacCCGGACu -3'
miRNA:   3'- aUUGCGCa--GCa----GGCC--AGCU--GGCCUGc -5'
10942 5' -57.6 NC_002794.1 + 144977 0.66 0.914391
Target:  5'- cGACgGUGUCGcgaCCGG-CG-CCGGGCGu -3'
miRNA:   3'- aUUG-CGCAGCa--GGCCaGCuGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 135844 0.66 0.914391
Target:  5'- ---gGCGUCGUCCGGaUGAauCCGcGGCc -3'
miRNA:   3'- auugCGCAGCAGGCCaGCU--GGC-CUGc -5'
10942 5' -57.6 NC_002794.1 + 101028 0.66 0.913829
Target:  5'- gGACGCGggcCGggcgCgGGUCGGCCgcuacugcgugcaGGACGc -3'
miRNA:   3'- aUUGCGCa--GCa---GgCCAGCUGG-------------CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 180738 0.66 0.913829
Target:  5'- gGACGaCGcCGUCCGGcuccucggcggcuUCGGcggcaacuguCCGGGCGg -3'
miRNA:   3'- aUUGC-GCaGCAGGCC-------------AGCU----------GGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 115951 0.66 0.913829
Target:  5'- -cGCGUGUCG-CCGGg-GACCgugggggggagcgGGACGg -3'
miRNA:   3'- auUGCGCAGCaGGCCagCUGG-------------CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 61162 0.66 0.908678
Target:  5'- gAGCGCG-CgGUCCGGaucggCGGCUGGuCGc -3'
miRNA:   3'- aUUGCGCaG-CAGGCCa----GCUGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 64115 0.66 0.908678
Target:  5'- cGGCGCGUCugcaCgCGGUCGA-CGGGCu -3'
miRNA:   3'- aUUGCGCAGca--G-GCCAGCUgGCCUGc -5'
10942 5' -57.6 NC_002794.1 + 145179 0.66 0.902748
Target:  5'- cAugGUGUCGgagaUGGUCG-CCGcGGCGg -3'
miRNA:   3'- aUugCGCAGCag--GCCAGCuGGC-CUGC- -5'
10942 5' -57.6 NC_002794.1 + 49031 0.66 0.902748
Target:  5'- ---gGCGUCGUCCGGcgCGGucgucagcguCCaGGGCGc -3'
miRNA:   3'- auugCGCAGCAGGCCa-GCU----------GG-CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 146855 0.66 0.902748
Target:  5'- -uGCGCGUCGUUCGcGuUCGGgUGGGgGg -3'
miRNA:   3'- auUGCGCAGCAGGC-C-AGCUgGCCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.