Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10942 | 5' | -57.6 | NC_002794.1 | + | 179097 | 0.66 | 0.925163 |
Target: 5'- cGAgGaacCGUCCGGUCGuccgcgguCCGGGCGc -3' miRNA: 3'- aUUgCgcaGCAGGCCAGCu-------GGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 115951 | 0.66 | 0.913829 |
Target: 5'- -cGCGUGUCG-CCGGg-GACCgugggggggagcgGGACGg -3' miRNA: 3'- auUGCGCAGCaGGCCagCUGG-------------CCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 180738 | 0.66 | 0.913829 |
Target: 5'- gGACGaCGcCGUCCGGcuccucggcggcuUCGGcggcaacuguCCGGGCGg -3' miRNA: 3'- aUUGC-GCaGCAGGCC-------------AGCU----------GGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 61162 | 0.66 | 0.908678 |
Target: 5'- gAGCGCG-CgGUCCGGaucggCGGCUGGuCGc -3' miRNA: 3'- aUUGCGCaG-CAGGCCa----GCUGGCCuGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 101028 | 0.66 | 0.913829 |
Target: 5'- gGACGCGggcCGggcgCgGGUCGGCCgcuacugcgugcaGGACGc -3' miRNA: 3'- aUUGCGCa--GCa---GgCCAGCUGG-------------CCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 64115 | 0.66 | 0.908678 |
Target: 5'- cGGCGCGUCugcaCgCGGUCGA-CGGGCu -3' miRNA: 3'- aUUGCGCAGca--G-GCCAGCUgGCCUGc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 145179 | 0.66 | 0.902748 |
Target: 5'- cAugGUGUCGgagaUGGUCG-CCGcGGCGg -3' miRNA: 3'- aUugCGCAGCag--GCCAGCuGGC-CUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 49031 | 0.66 | 0.902748 |
Target: 5'- ---gGCGUCGUCCGGcgCGGucgucagcguCCaGGGCGc -3' miRNA: 3'- auugCGCAGCAGGCCa-GCU----------GG-CCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 122668 | 0.66 | 0.902144 |
Target: 5'- cGGCGCaGgccCGgcugugCCGGUCGcgccagcGCCGGGCGa -3' miRNA: 3'- aUUGCG-Ca--GCa-----GGCCAGC-------UGGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 133895 | 0.66 | 0.914391 |
Target: 5'- gGGCuGCGUCGUCUGGauUCGGucuaCGaGACGg -3' miRNA: 3'- aUUG-CGCAGCAGGCC--AGCUg---GC-CUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 36888 | 0.66 | 0.914391 |
Target: 5'- gUAGCGCGUgcagagCGUCCagaGGUCGcggcGCCGGccccGCGa -3' miRNA: 3'- -AUUGCGCA------GCAGG---CCAGC----UGGCC----UGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 120119 | 0.66 | 0.914391 |
Target: 5'- gUGACGCG-CGcgaCGG-CGACCggGGACGg -3' miRNA: 3'- -AUUGCGCaGCag-GCCaGCUGG--CCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 91061 | 0.66 | 0.925163 |
Target: 5'- -cGCGCGUCGUCauguacgccgUGGUgGGCuaCGGGCu -3' miRNA: 3'- auUGCGCAGCAG----------GCCAgCUG--GCCUGc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 105477 | 0.66 | 0.924646 |
Target: 5'- cGACGagcCGUCGucUCCGGUCGuggagccgccgccGCCGGuCGc -3' miRNA: 3'- aUUGC---GCAGC--AGGCCAGC-------------UGGCCuGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 131016 | 0.66 | 0.919886 |
Target: 5'- -cACGgGUCGg-UGGUCGugCGGcGCGg -3' miRNA: 3'- auUGCgCAGCagGCCAGCugGCC-UGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 140956 | 0.66 | 0.919886 |
Target: 5'- -cGCGCGgagugCGUgaGGUUGGCCGaGCGg -3' miRNA: 3'- auUGCGCa----GCAggCCAGCUGGCcUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 31719 | 0.66 | 0.919886 |
Target: 5'- -uGCGCGggaucCCGGaugaGACCGGGCGg -3' miRNA: 3'- auUGCGCagca-GGCCag--CUGGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 135844 | 0.66 | 0.914391 |
Target: 5'- ---gGCGUCGUCCGGaUGAauCCGcGGCc -3' miRNA: 3'- auugCGCAGCAGGCCaGCU--GGC-CUGc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 144977 | 0.66 | 0.914391 |
Target: 5'- cGACgGUGUCGcgaCCGG-CG-CCGGGCGu -3' miRNA: 3'- aUUG-CGCAGCa--GGCCaGCuGGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 19532 | 0.66 | 0.914391 |
Target: 5'- cGGCGCGgcgCGgcccgCCGGugUCGGacCCGGACu -3' miRNA: 3'- aUUGCGCa--GCa----GGCC--AGCU--GGCCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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