Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10942 | 5' | -57.6 | NC_002794.1 | + | 143574 | 0.68 | 0.847137 |
Target: 5'- -uGCGCGcCGUCCucggcggcgcuguGGUCGAacaCCGGcACGa -3' miRNA: 3'- auUGCGCaGCAGG-------------CCAGCU---GGCC-UGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 139597 | 0.68 | 0.855439 |
Target: 5'- aUGACGCGguaa-CGGUCGACCGaGAUc -3' miRNA: 3'- -AUUGCGCagcagGCCAGCUGGC-CUGc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 100513 | 0.68 | 0.858403 |
Target: 5'- --gUGCGUCuguuaUCCGGUCGGCggcaccgaggagcagCGGGCGg -3' miRNA: 3'- auuGCGCAGc----AGGCCAGCUG---------------GCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 92254 | 0.68 | 0.855439 |
Target: 5'- cGGCgGCGUCG-CUGGcggCGgcGCCGGGCGa -3' miRNA: 3'- aUUG-CGCAGCaGGCCa--GC--UGGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 133601 | 0.68 | 0.850938 |
Target: 5'- gAACGUGUCuGUCgaccagguagucaguCGGUCGGUCGGugGg -3' miRNA: 3'- aUUGCGCAG-CAG---------------GCCAGCUGGCCugC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 128748 | 0.68 | 0.854694 |
Target: 5'- aUAACGCccGUCGagagcggUCCGGUCagGGCCGGGUGg -3' miRNA: 3'- -AUUGCG--CAGC-------AGGCCAG--CUGGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 23445 | 0.68 | 0.847901 |
Target: 5'- aAACGUGauguaCGUCCGGaUCGACgucgGGGCGg -3' miRNA: 3'- aUUGCGCa----GCAGGCC-AGCUGg---CCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 56526 | 0.69 | 0.763752 |
Target: 5'- cGGCGC-UCGuUCCGGUCGccauCCGGAgCGc -3' miRNA: 3'- aUUGCGcAGC-AGGCCAGCu---GGCCU-GC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 47951 | 0.69 | 0.763752 |
Target: 5'- -cGCGCGUC--CCGGcgcCGGCUGGGCGa -3' miRNA: 3'- auUGCGCAGcaGGCCa--GCUGGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 185160 | 0.69 | 0.771879 |
Target: 5'- cGACGCGUCcUCCgccggcgcggcgcGGUCGGCgCGGuCGg -3' miRNA: 3'- aUUGCGCAGcAGG-------------CCAGCUG-GCCuGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 116896 | 0.69 | 0.772776 |
Target: 5'- cGGCGcCGUC-UCCGG-CGGCCGGucCGg -3' miRNA: 3'- aUUGC-GCAGcAGGCCaGCUGGCCu-GC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 143009 | 0.69 | 0.772776 |
Target: 5'- gAACcCGgucagCGUgCGGUCGGCCGGGuCGa -3' miRNA: 3'- aUUGcGCa----GCAgGCCAGCUGGCCU-GC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 121454 | 0.69 | 0.781686 |
Target: 5'- cGGC-CGcCGUCgGGUCGACCGucgaGACGa -3' miRNA: 3'- aUUGcGCaGCAGgCCAGCUGGC----CUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 143728 | 0.69 | 0.781686 |
Target: 5'- ---gGCGUCGUCC--UCGcccGCCGGACGc -3' miRNA: 3'- auugCGCAGCAGGccAGC---UGGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 140191 | 0.69 | 0.799127 |
Target: 5'- cGACgGCGUCGUCgaGGggCGACCcGGGCc -3' miRNA: 3'- aUUG-CGCAGCAGg-CCa-GCUGG-CCUGc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 106331 | 0.69 | 0.790472 |
Target: 5'- cGACGgGUCGacgguucgCCgGGUCGACggCGGGCGg -3' miRNA: 3'- aUUGCgCAGCa-------GG-CCAGCUG--GCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 48597 | 0.69 | 0.799127 |
Target: 5'- cGGCGCGUCG-CCGucggcGUCGGCCucaGACGc -3' miRNA: 3'- aUUGCGCAGCaGGC-----CAGCUGGc--CUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 128248 | 0.69 | 0.799127 |
Target: 5'- aGACG-GUCGUCUGGUCGcgguCgGGGCc -3' miRNA: 3'- aUUGCgCAGCAGGCCAGCu---GgCCUGc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 112335 | 0.69 | 0.807644 |
Target: 5'- gAGCGCGcCGgccggcggcgCCGG-CGGCgGGGCGg -3' miRNA: 3'- aUUGCGCaGCa---------GGCCaGCUGgCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 184482 | 0.69 | 0.807644 |
Target: 5'- cGGCGCG-CGgggccCCGGaCGcCCGGGCGg -3' miRNA: 3'- aUUGCGCaGCa----GGCCaGCuGGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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