miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 5' -57.6 NC_002794.1 + 157330 0.98 0.016743
Target:  5'- aGACGCG-CGUCCGGUCGACCGGACGa -3'
miRNA:   3'- aUUGCGCaGCAGGCCAGCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 124396 0.81 0.220235
Target:  5'- cGGCGCGUCG-CCGGUCGuCgGGGCGc -3'
miRNA:   3'- aUUGCGCAGCaGGCCAGCuGgCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 44395 0.75 0.441981
Target:  5'- cGACGCGccCGuUCCGGUCuGACCGGcCGg -3'
miRNA:   3'- aUUGCGCa-GC-AGGCCAG-CUGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 30065 0.74 0.532987
Target:  5'- --cCGCGggGUCCGGUCGcCCGGuCGa -3'
miRNA:   3'- auuGCGCagCAGGCCAGCuGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 152910 0.73 0.58099
Target:  5'- -cACGCcaUCGUCCGGaUCGAggcCCGGGCGu -3'
miRNA:   3'- auUGCGc-AGCAGGCC-AGCU---GGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 109525 0.72 0.610237
Target:  5'- --cCGCGcUCGUUCGGcgUCgGGCCGGGCGg -3'
miRNA:   3'- auuGCGC-AGCAGGCC--AG-CUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 49570 0.72 0.620025
Target:  5'- gGACGaa-CGaCCGGUCGACCGGAUc -3'
miRNA:   3'- aUUGCgcaGCaGGCCAGCUGGCCUGc -5'
10942 5' -57.6 NC_002794.1 + 137353 0.72 0.63864
Target:  5'- ---gGCGUCGUCgGGgucuucuUCGAgCCGGGCGa -3'
miRNA:   3'- auugCGCAGCAGgCC-------AGCU-GGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 115024 0.72 0.639619
Target:  5'- -cGCGCGcccacCGUCUgcaGGUgCGACCGGGCGg -3'
miRNA:   3'- auUGCGCa----GCAGG---CCA-GCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 153688 0.71 0.668952
Target:  5'- cGACGCG-CGaCCGG-CGACCGGuuuaGCGa -3'
miRNA:   3'- aUUGCGCaGCaGGCCaGCUGGCC----UGC- -5'
10942 5' -57.6 NC_002794.1 + 182067 0.71 0.678684
Target:  5'- gGGCGCcugCGUCCGGUCGGCCa---- -3'
miRNA:   3'- aUUGCGca-GCAGGCCAGCUGGccugc -5'
10942 5' -57.6 NC_002794.1 + 124130 0.71 0.688382
Target:  5'- gAGCGCGUC-UCCGG-CGcCCGGgaGCGg -3'
miRNA:   3'- aUUGCGCAGcAGGCCaGCuGGCC--UGC- -5'
10942 5' -57.6 NC_002794.1 + 106825 0.71 0.688382
Target:  5'- --uUGCGUCGUCCGGcgcUCGGCCuGcGGCu -3'
miRNA:   3'- auuGCGCAGCAGGCC---AGCUGG-C-CUGc -5'
10942 5' -57.6 NC_002794.1 + 141596 0.71 0.698036
Target:  5'- --cCGCGUCG-CCGGgcggcucggCGACCGGcucGCGg -3'
miRNA:   3'- auuGCGCAGCaGGCCa--------GCUGGCC---UGC- -5'
10942 5' -57.6 NC_002794.1 + 145778 0.71 0.707641
Target:  5'- -cACGCGgagUCGUccCCGGcCGGCuCGGACGa -3'
miRNA:   3'- auUGCGC---AGCA--GGCCaGCUG-GCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 83862 0.71 0.707641
Target:  5'- aAGC-CGUCGUcCCGGUCGGcgcgacggccCCGGGCu -3'
miRNA:   3'- aUUGcGCAGCA-GGCCAGCU----------GGCCUGc -5'
10942 5' -57.6 NC_002794.1 + 146906 0.7 0.726665
Target:  5'- aGGCGC-UCGggcgCgGGgaUCGGCCGGACGg -3'
miRNA:   3'- aUUGCGcAGCa---GgCC--AGCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 128932 0.7 0.735132
Target:  5'- cGACGaCGaaCGUCCGGUgGagccugcGCCGGACGa -3'
miRNA:   3'- aUUGC-GCa-GCAGGCCAgC-------UGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 137389 0.7 0.736069
Target:  5'- cGACGCGg-GUCCGGUCuGuCCGG-CGu -3'
miRNA:   3'- aUUGCGCagCAGGCCAG-CuGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 106964 0.7 0.754621
Target:  5'- -cACGCGUCGccucgCgCGG-CGGCCGGcACGg -3'
miRNA:   3'- auUGCGCAGCa----G-GCCaGCUGGCC-UGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.