miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 5' -57.6 NC_002794.1 + 122668 0.66 0.902144
Target:  5'- cGGCGCaGgccCGgcugugCCGGUCGcgccagcGCCGGGCGa -3'
miRNA:   3'- aUUGCG-Ca--GCa-----GGCCAGC-------UGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 116681 0.67 0.896605
Target:  5'- gAGCGUGUCGaUCCGGga-GCCGGcCu -3'
miRNA:   3'- aUUGCGCAGC-AGGCCagcUGGCCuGc -5'
10942 5' -57.6 NC_002794.1 + 180256 0.67 0.896605
Target:  5'- gGACGUGUUGUCCGcuUCG-CCGGuCu -3'
miRNA:   3'- aUUGCGCAGCAGGCc-AGCuGGCCuGc -5'
10942 5' -57.6 NC_002794.1 + 152452 0.67 0.890251
Target:  5'- -uACGCGUaCGacCCGGaCGACCaGACGu -3'
miRNA:   3'- auUGCGCA-GCa-GGCCaGCUGGcCUGC- -5'
10942 5' -57.6 NC_002794.1 + 189558 0.67 0.890251
Target:  5'- cAugGCGguccCGcUCGGUCGGCCGGccCGg -3'
miRNA:   3'- aUugCGCa---GCaGGCCAGCUGGCCu-GC- -5'
10942 5' -57.6 NC_002794.1 + 138722 0.67 0.883689
Target:  5'- --uCGCGUCGagCCGGcUCGACgGGGu- -3'
miRNA:   3'- auuGCGCAGCa-GGCC-AGCUGgCCUgc -5'
10942 5' -57.6 NC_002794.1 + 195600 0.67 0.882352
Target:  5'- cGACGCGcccccgcgcuggCGUCCGGcccaaaCGGCCGG-CGa -3'
miRNA:   3'- aUUGCGCa-----------GCAGGCCa-----GCUGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 110560 0.67 0.876922
Target:  5'- --cCGCGUCGUcgCCGucGUCGAUCGGGa- -3'
miRNA:   3'- auuGCGCAGCA--GGC--CAGCUGGCCUgc -5'
10942 5' -57.6 NC_002794.1 + 112098 0.67 0.876922
Target:  5'- --uUGCG-CGUCCaGGcgCGGCCgGGACGa -3'
miRNA:   3'- auuGCGCaGCAGG-CCa-GCUGG-CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 185766 0.67 0.869955
Target:  5'- cGGCGCGgccgccCGUCacacGUCGGCCGGcGCGg -3'
miRNA:   3'- aUUGCGCa-----GCAGgc--CAGCUGGCC-UGC- -5'
10942 5' -57.6 NC_002794.1 + 89817 0.67 0.869248
Target:  5'- gUGugGgGUgCGUCCuggggaacgagucGGUCGGCCGGcCGu -3'
miRNA:   3'- -AUugCgCA-GCAGG-------------CCAGCUGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 148010 0.67 0.862793
Target:  5'- --cCGCGUCGgccucggUCGGUUGAUCGGGg- -3'
miRNA:   3'- auuGCGCAGCa------GGCCAGCUGGCCUgc -5'
10942 5' -57.6 NC_002794.1 + 70048 0.67 0.862793
Target:  5'- -cACGUagGUCGcCCGGUCGGgCGGcCGc -3'
miRNA:   3'- auUGCG--CAGCaGGCCAGCUgGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 100513 0.68 0.858403
Target:  5'- --gUGCGUCuguuaUCCGGUCGGCggcaccgaggagcagCGGGCGg -3'
miRNA:   3'- auuGCGCAGc----AGGCCAGCUG---------------GCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 139597 0.68 0.855439
Target:  5'- aUGACGCGguaa-CGGUCGACCGaGAUc -3'
miRNA:   3'- -AUUGCGCagcagGCCAGCUGGC-CUGc -5'
10942 5' -57.6 NC_002794.1 + 92254 0.68 0.855439
Target:  5'- cGGCgGCGUCG-CUGGcggCGgcGCCGGGCGa -3'
miRNA:   3'- aUUG-CGCAGCaGGCCa--GC--UGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 128748 0.68 0.854694
Target:  5'- aUAACGCccGUCGagagcggUCCGGUCagGGCCGGGUGg -3'
miRNA:   3'- -AUUGCG--CAGC-------AGGCCAG--CUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 133601 0.68 0.850938
Target:  5'- gAACGUGUCuGUCgaccagguagucaguCGGUCGGUCGGugGg -3'
miRNA:   3'- aUUGCGCAG-CAG---------------GCCAGCUGGCCugC- -5'
10942 5' -57.6 NC_002794.1 + 23445 0.68 0.847901
Target:  5'- aAACGUGauguaCGUCCGGaUCGACgucgGGGCGg -3'
miRNA:   3'- aUUGCGCa----GCAGGCC-AGCUGg---CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 143574 0.68 0.847137
Target:  5'- -uGCGCGcCGUCCucggcggcgcuguGGUCGAacaCCGGcACGa -3'
miRNA:   3'- auUGCGCaGCAGG-------------CCAGCU---GGCC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.