miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 5' -57.6 NC_002794.1 + 44721 0.68 0.840183
Target:  5'- cGGCGaCGUCGgCCGG-CGccGCCGGAgGg -3'
miRNA:   3'- aUUGC-GCAGCaGGCCaGC--UGGCCUgC- -5'
10942 5' -57.6 NC_002794.1 + 64818 0.68 0.840183
Target:  5'- gGACgGCGgCGagCCGGcgccgaCGACCGGACGg -3'
miRNA:   3'- aUUG-CGCaGCa-GGCCa-----GCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 126613 0.68 0.824234
Target:  5'- cGGCGcCGaCGUCgCGGcgugagcgCGACCGGGCGc -3'
miRNA:   3'- aUUGC-GCaGCAG-GCCa-------GCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 124310 0.68 0.816016
Target:  5'- aAACGC-UCGcCCGGUCGAUCGacccGCGa -3'
miRNA:   3'- aUUGCGcAGCaGGCCAGCUGGCc---UGC- -5'
10942 5' -57.6 NC_002794.1 + 123832 0.68 0.816016
Target:  5'- cGGCGCccGUCGaUCCGGaUG-CCGGGCGu -3'
miRNA:   3'- aUUGCG--CAGC-AGGCCaGCuGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 42463 0.68 0.816016
Target:  5'- cAugGCGUCGUCCauGUCGcgcgcGCCGGGg- -3'
miRNA:   3'- aUugCGCAGCAGGc-CAGC-----UGGCCUgc -5'
10942 5' -57.6 NC_002794.1 + 37843 0.68 0.81352
Target:  5'- cUAACGUGgCGaccaggcucuucucUCCGGUCGGCgucuCGGGCGg -3'
miRNA:   3'- -AUUGCGCaGC--------------AGGCCAGCUG----GCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 184482 0.69 0.807644
Target:  5'- cGGCGCG-CGgggccCCGGaCGcCCGGGCGg -3'
miRNA:   3'- aUUGCGCaGCa----GGCCaGCuGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 112335 0.69 0.807644
Target:  5'- gAGCGCGcCGgccggcggcgCCGG-CGGCgGGGCGg -3'
miRNA:   3'- aUUGCGCaGCa---------GGCCaGCUGgCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 128248 0.69 0.799127
Target:  5'- aGACG-GUCGUCUGGUCGcgguCgGGGCc -3'
miRNA:   3'- aUUGCgCAGCAGGCCAGCu---GgCCUGc -5'
10942 5' -57.6 NC_002794.1 + 48597 0.69 0.799127
Target:  5'- cGGCGCGUCG-CCGucggcGUCGGCCucaGACGc -3'
miRNA:   3'- aUUGCGCAGCaGGC-----CAGCUGGc--CUGC- -5'
10942 5' -57.6 NC_002794.1 + 140191 0.69 0.799127
Target:  5'- cGACgGCGUCGUCgaGGggCGACCcGGGCc -3'
miRNA:   3'- aUUG-CGCAGCAGg-CCa-GCUGG-CCUGc -5'
10942 5' -57.6 NC_002794.1 + 106331 0.69 0.790472
Target:  5'- cGACGgGUCGacgguucgCCgGGUCGACggCGGGCGg -3'
miRNA:   3'- aUUGCgCAGCa-------GG-CCAGCUG--GCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 121454 0.69 0.781686
Target:  5'- cGGC-CGcCGUCgGGUCGACCGucgaGACGa -3'
miRNA:   3'- aUUGcGCaGCAGgCCAGCUGGC----CUGC- -5'
10942 5' -57.6 NC_002794.1 + 143728 0.69 0.781686
Target:  5'- ---gGCGUCGUCC--UCGcccGCCGGACGc -3'
miRNA:   3'- auugCGCAGCAGGccAGC---UGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 143009 0.69 0.772776
Target:  5'- gAACcCGgucagCGUgCGGUCGGCCGGGuCGa -3'
miRNA:   3'- aUUGcGCa----GCAgGCCAGCUGGCCU-GC- -5'
10942 5' -57.6 NC_002794.1 + 116896 0.69 0.772776
Target:  5'- cGGCGcCGUC-UCCGG-CGGCCGGucCGg -3'
miRNA:   3'- aUUGC-GCAGcAGGCCaGCUGGCCu-GC- -5'
10942 5' -57.6 NC_002794.1 + 185160 0.69 0.771879
Target:  5'- cGACGCGUCcUCCgccggcgcggcgcGGUCGGCgCGGuCGg -3'
miRNA:   3'- aUUGCGCAGcAGG-------------CCAGCUG-GCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 47951 0.69 0.763752
Target:  5'- -cGCGCGUC--CCGGcgcCGGCUGGGCGa -3'
miRNA:   3'- auUGCGCAGcaGGCCa--GCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 56526 0.69 0.763752
Target:  5'- cGGCGC-UCGuUCCGGUCGccauCCGGAgCGc -3'
miRNA:   3'- aUUGCGcAGC-AGGCCAGCu---GGCCU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.