miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 5' -57.6 NC_002794.1 + 19532 0.66 0.914391
Target:  5'- cGGCGCGgcgCGgcccgCCGGugUCGGacCCGGACu -3'
miRNA:   3'- aUUGCGCa--GCa----GGCC--AGCU--GGCCUGc -5'
10942 5' -57.6 NC_002794.1 + 23445 0.68 0.847901
Target:  5'- aAACGUGauguaCGUCCGGaUCGACgucgGGGCGg -3'
miRNA:   3'- aUUGCGCa----GCAGGCC-AGCUGg---CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 30065 0.74 0.532987
Target:  5'- --cCGCGggGUCCGGUCGcCCGGuCGa -3'
miRNA:   3'- auuGCGCagCAGGCCAGCuGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 31719 0.66 0.919886
Target:  5'- -uGCGCGggaucCCGGaugaGACCGGGCGg -3'
miRNA:   3'- auUGCGCagca-GGCCag--CUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 36888 0.66 0.914391
Target:  5'- gUAGCGCGUgcagagCGUCCagaGGUCGcggcGCCGGccccGCGa -3'
miRNA:   3'- -AUUGCGCA------GCAGG---CCAGC----UGGCC----UGC- -5'
10942 5' -57.6 NC_002794.1 + 37843 0.68 0.81352
Target:  5'- cUAACGUGgCGaccaggcucuucucUCCGGUCGGCgucuCGGGCGg -3'
miRNA:   3'- -AUUGCGCaGC--------------AGGCCAGCUG----GCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 42463 0.68 0.816016
Target:  5'- cAugGCGUCGUCCauGUCGcgcgcGCCGGGg- -3'
miRNA:   3'- aUugCGCAGCAGGc-CAGC-----UGGCCUgc -5'
10942 5' -57.6 NC_002794.1 + 44395 0.75 0.441981
Target:  5'- cGACGCGccCGuUCCGGUCuGACCGGcCGg -3'
miRNA:   3'- aUUGCGCa-GC-AGGCCAG-CUGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 44721 0.68 0.840183
Target:  5'- cGGCGaCGUCGgCCGG-CGccGCCGGAgGg -3'
miRNA:   3'- aUUGC-GCAGCaGGCCaGC--UGGCCUgC- -5'
10942 5' -57.6 NC_002794.1 + 47951 0.69 0.763752
Target:  5'- -cGCGCGUC--CCGGcgcCGGCUGGGCGa -3'
miRNA:   3'- auUGCGCAGcaGGCCa--GCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 48597 0.69 0.799127
Target:  5'- cGGCGCGUCG-CCGucggcGUCGGCCucaGACGc -3'
miRNA:   3'- aUUGCGCAGCaGGC-----CAGCUGGc--CUGC- -5'
10942 5' -57.6 NC_002794.1 + 49031 0.66 0.902748
Target:  5'- ---gGCGUCGUCCGGcgCGGucgucagcguCCaGGGCGc -3'
miRNA:   3'- auugCGCAGCAGGCCa-GCU----------GG-CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 49570 0.72 0.620025
Target:  5'- gGACGaa-CGaCCGGUCGACCGGAUc -3'
miRNA:   3'- aUUGCgcaGCaGGCCAGCUGGCCUGc -5'
10942 5' -57.6 NC_002794.1 + 56526 0.69 0.763752
Target:  5'- cGGCGC-UCGuUCCGGUCGccauCCGGAgCGc -3'
miRNA:   3'- aUUGCGcAGC-AGGCCAGCu---GGCCU-GC- -5'
10942 5' -57.6 NC_002794.1 + 61162 0.66 0.908678
Target:  5'- gAGCGCG-CgGUCCGGaucggCGGCUGGuCGc -3'
miRNA:   3'- aUUGCGCaG-CAGGCCa----GCUGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 64115 0.66 0.908678
Target:  5'- cGGCGCGUCugcaCgCGGUCGA-CGGGCu -3'
miRNA:   3'- aUUGCGCAGca--G-GCCAGCUgGCCUGc -5'
10942 5' -57.6 NC_002794.1 + 64818 0.68 0.840183
Target:  5'- gGACgGCGgCGagCCGGcgccgaCGACCGGACGg -3'
miRNA:   3'- aUUG-CGCaGCa-GGCCa-----GCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 70048 0.67 0.862793
Target:  5'- -cACGUagGUCGcCCGGUCGGgCGGcCGc -3'
miRNA:   3'- auUGCG--CAGCaGGCCAGCUgGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 83862 0.71 0.707641
Target:  5'- aAGC-CGUCGUcCCGGUCGGcgcgacggccCCGGGCu -3'
miRNA:   3'- aUUGcGCAGCA-GGCCAGCU----------GGCCUGc -5'
10942 5' -57.6 NC_002794.1 + 89817 0.67 0.869248
Target:  5'- gUGugGgGUgCGUCCuggggaacgagucGGUCGGCCGGcCGu -3'
miRNA:   3'- -AUugCgCA-GCAGG-------------CCAGCUGGCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.