miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 5' -57.6 NC_002794.1 + 91061 0.66 0.925163
Target:  5'- -cGCGCGUCGUCauguacgccgUGGUgGGCuaCGGGCu -3'
miRNA:   3'- auUGCGCAGCAG----------GCCAgCUG--GCCUGc -5'
10942 5' -57.6 NC_002794.1 + 92254 0.68 0.855439
Target:  5'- cGGCgGCGUCG-CUGGcggCGgcGCCGGGCGa -3'
miRNA:   3'- aUUG-CGCAGCaGGCCa--GC--UGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 100513 0.68 0.858403
Target:  5'- --gUGCGUCuguuaUCCGGUCGGCggcaccgaggagcagCGGGCGg -3'
miRNA:   3'- auuGCGCAGc----AGGCCAGCUG---------------GCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 101028 0.66 0.913829
Target:  5'- gGACGCGggcCGggcgCgGGUCGGCCgcuacugcgugcaGGACGc -3'
miRNA:   3'- aUUGCGCa--GCa---GgCCAGCUGG-------------CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 105477 0.66 0.924646
Target:  5'- cGACGagcCGUCGucUCCGGUCGuggagccgccgccGCCGGuCGc -3'
miRNA:   3'- aUUGC---GCAGC--AGGCCAGC-------------UGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 106331 0.69 0.790472
Target:  5'- cGACGgGUCGacgguucgCCgGGUCGACggCGGGCGg -3'
miRNA:   3'- aUUGCgCAGCa-------GG-CCAGCUG--GCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 106825 0.71 0.688382
Target:  5'- --uUGCGUCGUCCGGcgcUCGGCCuGcGGCu -3'
miRNA:   3'- auuGCGCAGCAGGCC---AGCUGG-C-CUGc -5'
10942 5' -57.6 NC_002794.1 + 106964 0.7 0.754621
Target:  5'- -cACGCGUCGccucgCgCGG-CGGCCGGcACGg -3'
miRNA:   3'- auUGCGCAGCa----G-GCCaGCUGGCC-UGC- -5'
10942 5' -57.6 NC_002794.1 + 109525 0.72 0.610237
Target:  5'- --cCGCGcUCGUUCGGcgUCgGGCCGGGCGg -3'
miRNA:   3'- auuGCGC-AGCAGGCC--AG-CUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 110560 0.67 0.876922
Target:  5'- --cCGCGUCGUcgCCGucGUCGAUCGGGa- -3'
miRNA:   3'- auuGCGCAGCA--GGC--CAGCUGGCCUgc -5'
10942 5' -57.6 NC_002794.1 + 112098 0.67 0.876922
Target:  5'- --uUGCG-CGUCCaGGcgCGGCCgGGACGa -3'
miRNA:   3'- auuGCGCaGCAGG-CCa-GCUGG-CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 112335 0.69 0.807644
Target:  5'- gAGCGCGcCGgccggcggcgCCGG-CGGCgGGGCGg -3'
miRNA:   3'- aUUGCGCaGCa---------GGCCaGCUGgCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 115024 0.72 0.639619
Target:  5'- -cGCGCGcccacCGUCUgcaGGUgCGACCGGGCGg -3'
miRNA:   3'- auUGCGCa----GCAGG---CCA-GCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 115951 0.66 0.913829
Target:  5'- -cGCGUGUCG-CCGGg-GACCgugggggggagcgGGACGg -3'
miRNA:   3'- auUGCGCAGCaGGCCagCUGG-------------CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 116681 0.67 0.896605
Target:  5'- gAGCGUGUCGaUCCGGga-GCCGGcCu -3'
miRNA:   3'- aUUGCGCAGC-AGGCCagcUGGCCuGc -5'
10942 5' -57.6 NC_002794.1 + 116896 0.69 0.772776
Target:  5'- cGGCGcCGUC-UCCGG-CGGCCGGucCGg -3'
miRNA:   3'- aUUGC-GCAGcAGGCCaGCUGGCCu-GC- -5'
10942 5' -57.6 NC_002794.1 + 120119 0.66 0.914391
Target:  5'- gUGACGCG-CGcgaCGG-CGACCggGGACGg -3'
miRNA:   3'- -AUUGCGCaGCag-GCCaGCUGG--CCUGC- -5'
10942 5' -57.6 NC_002794.1 + 121454 0.69 0.781686
Target:  5'- cGGC-CGcCGUCgGGUCGACCGucgaGACGa -3'
miRNA:   3'- aUUGcGCaGCAGgCCAGCUGGC----CUGC- -5'
10942 5' -57.6 NC_002794.1 + 122668 0.66 0.902144
Target:  5'- cGGCGCaGgccCGgcugugCCGGUCGcgccagcGCCGGGCGa -3'
miRNA:   3'- aUUGCG-Ca--GCa-----GGCCAGC-------UGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 123798 0.7 0.754621
Target:  5'- gGugGCGcCGUUCGGg-GGCgCGGACGa -3'
miRNA:   3'- aUugCGCaGCAGGCCagCUG-GCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.