miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 5' -57.6 NC_002794.1 + 195600 0.67 0.882352
Target:  5'- cGACGCGcccccgcgcuggCGUCCGGcccaaaCGGCCGG-CGa -3'
miRNA:   3'- aUUGCGCa-----------GCAGGCCa-----GCUGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 189558 0.67 0.890251
Target:  5'- cAugGCGguccCGcUCGGUCGGCCGGccCGg -3'
miRNA:   3'- aUugCGCa---GCaGGCCAGCUGGCCu-GC- -5'
10942 5' -57.6 NC_002794.1 + 185766 0.67 0.869955
Target:  5'- cGGCGCGgccgccCGUCacacGUCGGCCGGcGCGg -3'
miRNA:   3'- aUUGCGCa-----GCAGgc--CAGCUGGCC-UGC- -5'
10942 5' -57.6 NC_002794.1 + 185160 0.69 0.771879
Target:  5'- cGACGCGUCcUCCgccggcgcggcgcGGUCGGCgCGGuCGg -3'
miRNA:   3'- aUUGCGCAGcAGG-------------CCAGCUG-GCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 184482 0.69 0.807644
Target:  5'- cGGCGCG-CGgggccCCGGaCGcCCGGGCGg -3'
miRNA:   3'- aUUGCGCaGCa----GGCCaGCuGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 182067 0.71 0.678684
Target:  5'- gGGCGCcugCGUCCGGUCGGCCa---- -3'
miRNA:   3'- aUUGCGca-GCAGGCCAGCUGGccugc -5'
10942 5' -57.6 NC_002794.1 + 180738 0.66 0.913829
Target:  5'- gGACGaCGcCGUCCGGcuccucggcggcuUCGGcggcaacuguCCGGGCGg -3'
miRNA:   3'- aUUGC-GCaGCAGGCC-------------AGCU----------GGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 180256 0.67 0.896605
Target:  5'- gGACGUGUUGUCCGcuUCG-CCGGuCu -3'
miRNA:   3'- aUUGCGCAGCAGGCc-AGCuGGCCuGc -5'
10942 5' -57.6 NC_002794.1 + 179097 0.66 0.925163
Target:  5'- cGAgGaacCGUCCGGUCGuccgcgguCCGGGCGc -3'
miRNA:   3'- aUUgCgcaGCAGGCCAGCu-------GGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 157330 0.98 0.016743
Target:  5'- aGACGCG-CGUCCGGUCGACCGGACGa -3'
miRNA:   3'- aUUGCGCaGCAGGCCAGCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 156187 0.7 0.754621
Target:  5'- gGACGCGUCaucggagucgCCGGUCGgaggGCCGG-CGa -3'
miRNA:   3'- aUUGCGCAGca--------GGCCAGC----UGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 153688 0.71 0.668952
Target:  5'- cGACGCG-CGaCCGG-CGACCGGuuuaGCGa -3'
miRNA:   3'- aUUGCGCaGCaGGCCaGCUGGCC----UGC- -5'
10942 5' -57.6 NC_002794.1 + 152910 0.73 0.58099
Target:  5'- -cACGCcaUCGUCCGGaUCGAggcCCGGGCGu -3'
miRNA:   3'- auUGCGc-AGCAGGCC-AGCU---GGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 152452 0.67 0.890251
Target:  5'- -uACGCGUaCGacCCGGaCGACCaGACGu -3'
miRNA:   3'- auUGCGCA-GCa-GGCCaGCUGGcCUGC- -5'
10942 5' -57.6 NC_002794.1 + 148010 0.67 0.862793
Target:  5'- --cCGCGUCGgccucggUCGGUUGAUCGGGg- -3'
miRNA:   3'- auuGCGCAGCa------GGCCAGCUGGCCUgc -5'
10942 5' -57.6 NC_002794.1 + 146906 0.7 0.726665
Target:  5'- aGGCGC-UCGggcgCgGGgaUCGGCCGGACGg -3'
miRNA:   3'- aUUGCGcAGCa---GgCC--AGCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 146855 0.66 0.902748
Target:  5'- -uGCGCGUCGUUCGcGuUCGGgUGGGgGg -3'
miRNA:   3'- auUGCGCAGCAGGC-C-AGCUgGCCUgC- -5'
10942 5' -57.6 NC_002794.1 + 145778 0.71 0.707641
Target:  5'- -cACGCGgagUCGUccCCGGcCGGCuCGGACGa -3'
miRNA:   3'- auUGCGC---AGCA--GGCCaGCUG-GCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 145179 0.66 0.902748
Target:  5'- cAugGUGUCGgagaUGGUCG-CCGcGGCGg -3'
miRNA:   3'- aUugCGCAGCag--GCCAGCuGGC-CUGC- -5'
10942 5' -57.6 NC_002794.1 + 144977 0.66 0.914391
Target:  5'- cGACgGUGUCGcgaCCGG-CG-CCGGGCGu -3'
miRNA:   3'- aUUG-CGCAGCa--GGCCaGCuGGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.