miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 5' -57.6 NC_002794.1 + 143728 0.69 0.781686
Target:  5'- ---gGCGUCGUCC--UCGcccGCCGGACGc -3'
miRNA:   3'- auugCGCAGCAGGccAGC---UGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 143574 0.68 0.847137
Target:  5'- -uGCGCGcCGUCCucggcggcgcuguGGUCGAacaCCGGcACGa -3'
miRNA:   3'- auUGCGCaGCAGG-------------CCAGCU---GGCC-UGC- -5'
10942 5' -57.6 NC_002794.1 + 143009 0.69 0.772776
Target:  5'- gAACcCGgucagCGUgCGGUCGGCCGGGuCGa -3'
miRNA:   3'- aUUGcGCa----GCAgGCCAGCUGGCCU-GC- -5'
10942 5' -57.6 NC_002794.1 + 141596 0.71 0.698036
Target:  5'- --cCGCGUCG-CCGGgcggcucggCGACCGGcucGCGg -3'
miRNA:   3'- auuGCGCAGCaGGCCa--------GCUGGCC---UGC- -5'
10942 5' -57.6 NC_002794.1 + 140956 0.66 0.919886
Target:  5'- -cGCGCGgagugCGUgaGGUUGGCCGaGCGg -3'
miRNA:   3'- auUGCGCa----GCAggCCAGCUGGCcUGC- -5'
10942 5' -57.6 NC_002794.1 + 140191 0.69 0.799127
Target:  5'- cGACgGCGUCGUCgaGGggCGACCcGGGCc -3'
miRNA:   3'- aUUG-CGCAGCAGg-CCa-GCUGG-CCUGc -5'
10942 5' -57.6 NC_002794.1 + 139597 0.68 0.855439
Target:  5'- aUGACGCGguaa-CGGUCGACCGaGAUc -3'
miRNA:   3'- -AUUGCGCagcagGCCAGCUGGC-CUGc -5'
10942 5' -57.6 NC_002794.1 + 138722 0.67 0.883689
Target:  5'- --uCGCGUCGagCCGGcUCGACgGGGu- -3'
miRNA:   3'- auuGCGCAGCa-GGCC-AGCUGgCCUgc -5'
10942 5' -57.6 NC_002794.1 + 137389 0.7 0.736069
Target:  5'- cGACGCGg-GUCCGGUCuGuCCGG-CGu -3'
miRNA:   3'- aUUGCGCagCAGGCCAG-CuGGCCuGC- -5'
10942 5' -57.6 NC_002794.1 + 137353 0.72 0.63864
Target:  5'- ---gGCGUCGUCgGGgucuucuUCGAgCCGGGCGa -3'
miRNA:   3'- auugCGCAGCAGgCC-------AGCU-GGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 135844 0.66 0.914391
Target:  5'- ---gGCGUCGUCCGGaUGAauCCGcGGCc -3'
miRNA:   3'- auugCGCAGCAGGCCaGCU--GGC-CUGc -5'
10942 5' -57.6 NC_002794.1 + 133895 0.66 0.914391
Target:  5'- gGGCuGCGUCGUCUGGauUCGGucuaCGaGACGg -3'
miRNA:   3'- aUUG-CGCAGCAGGCC--AGCUg---GC-CUGC- -5'
10942 5' -57.6 NC_002794.1 + 133601 0.68 0.850938
Target:  5'- gAACGUGUCuGUCgaccagguagucaguCGGUCGGUCGGugGg -3'
miRNA:   3'- aUUGCGCAG-CAG---------------GCCAGCUGGCCugC- -5'
10942 5' -57.6 NC_002794.1 + 131016 0.66 0.919886
Target:  5'- -cACGgGUCGg-UGGUCGugCGGcGCGg -3'
miRNA:   3'- auUGCgCAGCagGCCAGCugGCC-UGC- -5'
10942 5' -57.6 NC_002794.1 + 128932 0.7 0.735132
Target:  5'- cGACGaCGaaCGUCCGGUgGagccugcGCCGGACGa -3'
miRNA:   3'- aUUGC-GCa-GCAGGCCAgC-------UGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 128748 0.68 0.854694
Target:  5'- aUAACGCccGUCGagagcggUCCGGUCagGGCCGGGUGg -3'
miRNA:   3'- -AUUGCG--CAGC-------AGGCCAG--CUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 128248 0.69 0.799127
Target:  5'- aGACG-GUCGUCUGGUCGcgguCgGGGCc -3'
miRNA:   3'- aUUGCgCAGCAGGCCAGCu---GgCCUGc -5'
10942 5' -57.6 NC_002794.1 + 126613 0.68 0.824234
Target:  5'- cGGCGcCGaCGUCgCGGcgugagcgCGACCGGGCGc -3'
miRNA:   3'- aUUGC-GCaGCAG-GCCa-------GCUGGCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 124396 0.81 0.220235
Target:  5'- cGGCGCGUCG-CCGGUCGuCgGGGCGc -3'
miRNA:   3'- aUUGCGCAGCaGGCCAGCuGgCCUGC- -5'
10942 5' -57.6 NC_002794.1 + 124310 0.68 0.816016
Target:  5'- aAACGC-UCGcCCGGUCGAUCGacccGCGa -3'
miRNA:   3'- aUUGCGcAGCaGGCCAGCUGGCc---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.