Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10942 | 5' | -57.6 | NC_002794.1 | + | 31719 | 0.66 | 0.919886 |
Target: 5'- -uGCGCGggaucCCGGaugaGACCGGGCGg -3' miRNA: 3'- auUGCGCagca-GGCCag--CUGGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 140956 | 0.66 | 0.919886 |
Target: 5'- -cGCGCGgagugCGUgaGGUUGGCCGaGCGg -3' miRNA: 3'- auUGCGCa----GCAggCCAGCUGGCcUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 131016 | 0.66 | 0.919886 |
Target: 5'- -cACGgGUCGg-UGGUCGugCGGcGCGg -3' miRNA: 3'- auUGCgCAGCagGCCAGCugGCC-UGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 105477 | 0.66 | 0.924646 |
Target: 5'- cGACGagcCGUCGucUCCGGUCGuggagccgccgccGCCGGuCGc -3' miRNA: 3'- aUUGC---GCAGC--AGGCCAGC-------------UGGCCuGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 91061 | 0.66 | 0.925163 |
Target: 5'- -cGCGCGUCGUCauguacgccgUGGUgGGCuaCGGGCu -3' miRNA: 3'- auUGCGCAGCAG----------GCCAgCUG--GCCUGc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 61162 | 0.66 | 0.908678 |
Target: 5'- gAGCGCG-CgGUCCGGaucggCGGCUGGuCGc -3' miRNA: 3'- aUUGCGCaG-CAGGCCa----GCUGGCCuGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 101028 | 0.66 | 0.913829 |
Target: 5'- gGACGCGggcCGggcgCgGGUCGGCCgcuacugcgugcaGGACGc -3' miRNA: 3'- aUUGCGCa--GCa---GgCCAGCUGG-------------CCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 112098 | 0.67 | 0.876922 |
Target: 5'- --uUGCG-CGUCCaGGcgCGGCCgGGACGa -3' miRNA: 3'- auuGCGCaGCAGG-CCa-GCUGG-CCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 195600 | 0.67 | 0.882352 |
Target: 5'- cGACGCGcccccgcgcuggCGUCCGGcccaaaCGGCCGG-CGa -3' miRNA: 3'- aUUGCGCa-----------GCAGGCCa-----GCUGGCCuGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 152452 | 0.67 | 0.890251 |
Target: 5'- -uACGCGUaCGacCCGGaCGACCaGACGu -3' miRNA: 3'- auUGCGCA-GCa-GGCCaGCUGGcCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 138722 | 0.67 | 0.883689 |
Target: 5'- --uCGCGUCGagCCGGcUCGACgGGGu- -3' miRNA: 3'- auuGCGCAGCa-GGCC-AGCUGgCCUgc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 110560 | 0.67 | 0.876922 |
Target: 5'- --cCGCGUCGUcgCCGucGUCGAUCGGGa- -3' miRNA: 3'- auuGCGCAGCA--GGC--CAGCUGGCCUgc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 189558 | 0.67 | 0.890251 |
Target: 5'- cAugGCGguccCGcUCGGUCGGCCGGccCGg -3' miRNA: 3'- aUugCGCa---GCaGGCCAGCUGGCCu-GC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 146855 | 0.66 | 0.902748 |
Target: 5'- -uGCGCGUCGUUCGcGuUCGGgUGGGgGg -3' miRNA: 3'- auUGCGCAGCAGGC-C-AGCUgGCCUgC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 122668 | 0.66 | 0.902144 |
Target: 5'- cGGCGCaGgccCGgcugugCCGGUCGcgccagcGCCGGGCGa -3' miRNA: 3'- aUUGCG-Ca--GCa-----GGCCAGC-------UGGCCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 116681 | 0.67 | 0.896605 |
Target: 5'- gAGCGUGUCGaUCCGGga-GCCGGcCu -3' miRNA: 3'- aUUGCGCAGC-AGGCCagcUGGCCuGc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 180256 | 0.67 | 0.896605 |
Target: 5'- gGACGUGUUGUCCGcuUCG-CCGGuCu -3' miRNA: 3'- aUUGCGCAGCAGGCc-AGCuGGCCuGc -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 49031 | 0.66 | 0.902748 |
Target: 5'- ---gGCGUCGUCCGGcgCGGucgucagcguCCaGGGCGc -3' miRNA: 3'- auugCGCAGCAGGCCa-GCU----------GG-CCUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 145179 | 0.66 | 0.902748 |
Target: 5'- cAugGUGUCGgagaUGGUCG-CCGcGGCGg -3' miRNA: 3'- aUugCGCAGCag--GCCAGCuGGC-CUGC- -5' |
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10942 | 5' | -57.6 | NC_002794.1 | + | 64115 | 0.66 | 0.908678 |
Target: 5'- cGGCGCGUCugcaCgCGGUCGA-CGGGCu -3' miRNA: 3'- aUUGCGCAGca--G-GCCAGCUgGCCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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