miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10943 3' -56.9 NC_002794.1 + 43878 0.66 0.906197
Target:  5'- aCGGUGagaUACccGGC-CGUCGCCg- -3'
miRNA:   3'- aGCCACgg-AUGaaCCGuGCAGCGGau -5'
10943 3' -56.9 NC_002794.1 + 151619 0.66 0.899986
Target:  5'- cUCGGcugacgGCCggcACUUGGCuCGcCGCCg- -3'
miRNA:   3'- -AGCCa-----CGGa--UGAACCGuGCaGCGGau -5'
10943 3' -56.9 NC_002794.1 + 56899 0.66 0.899986
Target:  5'- -aGGUGCC-GCgcgUGGcCACGggCGCCg- -3'
miRNA:   3'- agCCACGGaUGa--ACC-GUGCa-GCGGau -5'
10943 3' -56.9 NC_002794.1 + 99383 0.66 0.899986
Target:  5'- -aGGUGCCgACgauggUGGCGcCGUcCGCCc- -3'
miRNA:   3'- agCCACGGaUGa----ACCGU-GCA-GCGGau -5'
10943 3' -56.9 NC_002794.1 + 148124 0.66 0.886886
Target:  5'- gUCGGUGUCg----GGCGCGgggcCGCCg- -3'
miRNA:   3'- -AGCCACGGaugaaCCGUGCa---GCGGau -5'
10943 3' -56.9 NC_002794.1 + 91704 0.67 0.87291
Target:  5'- cUCGGUGCuCUACcagacGCGCaUCGCCUu -3'
miRNA:   3'- -AGCCACG-GAUGaac--CGUGcAGCGGAu -5'
10943 3' -56.9 NC_002794.1 + 122303 0.67 0.87291
Target:  5'- -gGaGUGCCcGC-UGGC-CGUCGCCg- -3'
miRNA:   3'- agC-CACGGaUGaACCGuGCAGCGGau -5'
10943 3' -56.9 NC_002794.1 + 48046 0.67 0.858094
Target:  5'- cCGaGUGCgUGCUgGGCACGgCGCUg- -3'
miRNA:   3'- aGC-CACGgAUGAaCCGUGCaGCGGau -5'
10943 3' -56.9 NC_002794.1 + 100166 0.67 0.841681
Target:  5'- cUGGUgGCCUGCggcaacUGGCACGUCuugaagaagauggGCCa- -3'
miRNA:   3'- aGCCA-CGGAUGa-----ACCGUGCAG-------------CGGau -5'
10943 3' -56.9 NC_002794.1 + 167051 0.68 0.834392
Target:  5'- aCGGUGCCgguCUUGcGUggGUCGUCa- -3'
miRNA:   3'- aGCCACGGau-GAAC-CGugCAGCGGau -5'
10943 3' -56.9 NC_002794.1 + 124385 0.68 0.826124
Target:  5'- cUCGGUcGCg-GC--GGCGCGUCGCCg- -3'
miRNA:   3'- -AGCCA-CGgaUGaaCCGUGCAGCGGau -5'
10943 3' -56.9 NC_002794.1 + 775 0.68 0.791409
Target:  5'- gCGGUGC--AUUUGGCACGgUGCCa- -3'
miRNA:   3'- aGCCACGgaUGAACCGUGCaGCGGau -5'
10943 3' -56.9 NC_002794.1 + 116726 0.7 0.70597
Target:  5'- cUCGGUGCCgaGCguguUGGCgACGcCGCCg- -3'
miRNA:   3'- -AGCCACGGa-UGa---ACCG-UGCaGCGGau -5'
10943 3' -56.9 NC_002794.1 + 11065 0.75 0.406895
Target:  5'- -gGGUGCagACUUGGUACGcCGCCUGc -3'
miRNA:   3'- agCCACGgaUGAACCGUGCaGCGGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.