miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 3' -67.5 NC_002794.1 + 69195 0.66 0.490921
Target:  5'- aCCGacgGGCCGCGGCGagGGCCcgaaUCg- -3'
miRNA:   3'- -GGCg--CCGGCGCCGCggCCGGcg--AGau -5'
10944 3' -67.5 NC_002794.1 + 79394 0.66 0.490921
Target:  5'- -aGCGGCCGguucuUGGUGCCGGCguaGCg--- -3'
miRNA:   3'- ggCGCCGGC-----GCCGCGGCCGg--CGagau -5'
10944 3' -67.5 NC_002794.1 + 176596 0.66 0.490921
Target:  5'- gCCGCGGCCcccGUGGCGCgucuccUGGCCuggagcCUCg- -3'
miRNA:   3'- -GGCGCCGG---CGCCGCG------GCCGGc-----GAGau -5'
10944 3' -67.5 NC_002794.1 + 104638 0.66 0.490921
Target:  5'- gCGaCGGCgGaCGGCGCggCGGCCGUcgggCUGc -3'
miRNA:   3'- gGC-GCCGgC-GCCGCG--GCCGGCGa---GAU- -5'
10944 3' -67.5 NC_002794.1 + 71883 0.66 0.490921
Target:  5'- aCGuCGaccacGCCGUGGCGCCGGUCa-UCUAc -3'
miRNA:   3'- gGC-GC-----CGGCGCCGCGGCCGGcgAGAU- -5'
10944 3' -67.5 NC_002794.1 + 48708 0.66 0.490921
Target:  5'- cCCGgGGCCGCGaGgGCCaGCUGgaCc- -3'
miRNA:   3'- -GGCgCCGGCGC-CgCGGcCGGCgaGau -5'
10944 3' -67.5 NC_002794.1 + 89606 0.66 0.490921
Target:  5'- gCCGCGaaccggcgagcGCCGC-GCGUCGcGCCGcCUCg- -3'
miRNA:   3'- -GGCGC-----------CGGCGcCGCGGC-CGGC-GAGau -5'
10944 3' -67.5 NC_002794.1 + 137544 0.66 0.490921
Target:  5'- gCCGCGcucugcacGCCGCGcGUGCuCGucgggaaccuGCCGCUCg- -3'
miRNA:   3'- -GGCGC--------CGGCGC-CGCG-GC----------CGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 7501 0.66 0.490921
Target:  5'- cCCGUccGGCCgGCGGCgGCCgaGGgCGUUCUc -3'
miRNA:   3'- -GGCG--CCGG-CGCCG-CGG--CCgGCGAGAu -5'
10944 3' -67.5 NC_002794.1 + 7912 0.66 0.489178
Target:  5'- gCGUGcGCgCGCGaGCGCgggaccucgggaGGCCGCUCa- -3'
miRNA:   3'- gGCGC-CG-GCGC-CGCGg-----------CCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 117853 0.66 0.488308
Target:  5'- uUC-CGGCgGCGGCGCCGucgggagaacgcccGCCGC-Cg- -3'
miRNA:   3'- -GGcGCCGgCGCCGCGGC--------------CGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 83107 0.66 0.482236
Target:  5'- uCCGCGGCgGCGGgGUCGGggugaGgUCUc -3'
miRNA:   3'- -GGCGCCGgCGCCgCGGCCgg---CgAGAu -5'
10944 3' -67.5 NC_002794.1 + 141005 0.66 0.482236
Target:  5'- cCCGUaGGCC--GGCGCgGGCCGC-Cg- -3'
miRNA:   3'- -GGCG-CCGGcgCCGCGgCCGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 182046 0.66 0.482236
Target:  5'- gCC-CGGCCgGCGGCGaCGGCCucCUCc- -3'
miRNA:   3'- -GGcGCCGG-CGCCGCgGCCGGc-GAGau -5'
10944 3' -67.5 NC_002794.1 + 127369 0.66 0.482236
Target:  5'- -gGCGGCCGa---GCCGGCCGUgcgggugaUCUGc -3'
miRNA:   3'- ggCGCCGGCgccgCGGCCGGCG--------AGAU- -5'
10944 3' -67.5 NC_002794.1 + 128021 0.66 0.482236
Target:  5'- cCCGCcGUCGCccGGCGCCG-CCGCg--- -3'
miRNA:   3'- -GGCGcCGGCG--CCGCGGCcGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 111681 0.66 0.482236
Target:  5'- gCGCucGGCC-CGGCGCuCGGcCCGC-CUc -3'
miRNA:   3'- gGCG--CCGGcGCCGCG-GCC-GGCGaGAu -5'
10944 3' -67.5 NC_002794.1 + 182741 0.66 0.473627
Target:  5'- gCGgGGUCGCcGCG-CGGCuCGCUCg- -3'
miRNA:   3'- gGCgCCGGCGcCGCgGCCG-GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 96312 0.66 0.473627
Target:  5'- gCCGCGGaaaCCGCGcGCGCCcuCCGCg--- -3'
miRNA:   3'- -GGCGCC---GGCGC-CGCGGccGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 104250 0.66 0.473627
Target:  5'- gCGCGGCCGagGGCcacGCCGaccuccugcGCCGC-CUGu -3'
miRNA:   3'- gGCGCCGGCg-CCG---CGGC---------CGGCGaGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.