miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 3' -67.5 NC_002794.1 + 143271 0.85 0.024019
Target:  5'- gCC-CGGCC-CGGCGCCGGCCGCUCg- -3'
miRNA:   3'- -GGcGCCGGcGCCGCGGCCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 127356 0.84 0.02655
Target:  5'- cUCGCGGCgGCGGCG-CGGCCGCUCg- -3'
miRNA:   3'- -GGCGCCGgCGCCGCgGCCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 68940 0.84 0.02862
Target:  5'- cCCGCgGGCCGCGGCGCCGGCgC-CUCUc -3'
miRNA:   3'- -GGCG-CCGGCGCCGCGGCCG-GcGAGAu -5'
10944 3' -67.5 NC_002794.1 + 32303 0.82 0.040576
Target:  5'- gCCGCGGCgGCcGCGCCGGCCGCg--- -3'
miRNA:   3'- -GGCGCCGgCGcCGCGGCCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 75375 0.8 0.054617
Target:  5'- gCCGCGGCCgGCGGCGgCGGCCuCUCc- -3'
miRNA:   3'- -GGCGCCGG-CGCCGCgGCCGGcGAGau -5'
10944 3' -67.5 NC_002794.1 + 141650 0.8 0.058807
Target:  5'- gCGUGGCCGCGGcCGCCGGCgGgUCg- -3'
miRNA:   3'- gGCGCCGGCGCC-GCGGCCGgCgAGau -5'
10944 3' -67.5 NC_002794.1 + 50666 0.79 0.066492
Target:  5'- -gGCGGCCGCGGCGCUcGCCGCg--- -3'
miRNA:   3'- ggCGCCGGCGCCGCGGcCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 111629 0.79 0.06983
Target:  5'- gCCGCGGCCGCcgccggucgGGCGCCgcGGCCGCg--- -3'
miRNA:   3'- -GGCGCCGGCG---------CCGCGG--CCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 115319 0.78 0.073328
Target:  5'- uCCGCacggucGCCGCGGCGuCCgGGCCGCUCg- -3'
miRNA:   3'- -GGCGc-----CGGCGCCGC-GG-CCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 129933 0.78 0.076995
Target:  5'- gCCGUGGCgacgGCGGCGgCGGCgGCUCUGg -3'
miRNA:   3'- -GGCGCCGg---CGCCGCgGCCGgCGAGAU- -5'
10944 3' -67.5 NC_002794.1 + 111113 0.78 0.080836
Target:  5'- aCCGUGGCCGUcgacGGCGCCGGCgGC-Cg- -3'
miRNA:   3'- -GGCGCCGGCG----CCGCGGCCGgCGaGau -5'
10944 3' -67.5 NC_002794.1 + 49410 0.78 0.082825
Target:  5'- aCgGCGGCCGCGGCGgCGGCgGCcgUCa- -3'
miRNA:   3'- -GgCGCCGGCGCCGCgGCCGgCG--AGau -5'
10944 3' -67.5 NC_002794.1 + 111322 0.77 0.084861
Target:  5'- gCCG-GGCCaGCGGCGCgGGCCGCagaUCUGc -3'
miRNA:   3'- -GGCgCCGG-CGCCGCGgCCGGCG---AGAU- -5'
10944 3' -67.5 NC_002794.1 + 156410 0.77 0.084861
Target:  5'- gCCGCGGCCGCGGCcacgGCCGGCgGgUg-- -3'
miRNA:   3'- -GGCGCCGGCGCCG----CGGCCGgCgAgau -5'
10944 3' -67.5 NC_002794.1 + 61553 0.77 0.086944
Target:  5'- aCGCcGCCGCGGCGgCGGCCGCcgUCg- -3'
miRNA:   3'- gGCGcCGGCGCCGCgGCCGGCG--AGau -5'
10944 3' -67.5 NC_002794.1 + 107526 0.77 0.089076
Target:  5'- gCCGaCGGCCggcGCGGCGCCGGCgGCg--- -3'
miRNA:   3'- -GGC-GCCGG---CGCCGCGGCCGgCGagau -5'
10944 3' -67.5 NC_002794.1 + 192020 0.77 0.091257
Target:  5'- gCCGCGGCUgcuguuucugugGCGGCGgCGGCUGCUgCUGc -3'
miRNA:   3'- -GGCGCCGG------------CGCCGCgGCCGGCGA-GAU- -5'
10944 3' -67.5 NC_002794.1 + 116130 0.77 0.091257
Target:  5'- gCCGCGGCgGCGGCGgCGGCgGC-Ca- -3'
miRNA:   3'- -GGCGCCGgCGCCGCgGCCGgCGaGau -5'
10944 3' -67.5 NC_002794.1 + 112339 0.77 0.093489
Target:  5'- gCGcCGGCCgGCGGCGCCGGCgGCg--- -3'
miRNA:   3'- gGC-GCCGG-CGCCGCGGCCGgCGagau -5'
10944 3' -67.5 NC_002794.1 + 56582 0.77 0.095773
Target:  5'- cCCGC-GCCGCGGCGCCcGCCGC-Cg- -3'
miRNA:   3'- -GGCGcCGGCGCCGCGGcCGGCGaGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.