miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 3' -67.5 NC_002794.1 + 187061 0.76 0.105445
Target:  5'- cCCGCGGcCCGCcaGGUGCCgcaGGCUGCUCg- -3'
miRNA:   3'- -GGCGCC-GGCG--CCGCGG---CCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 99802 0.76 0.10723
Target:  5'- gCGCGcGCCGCgGGCGCCGGCgccgucggccgaccUGCUCUu -3'
miRNA:   3'- gGCGC-CGGCG-CCGCGGCCG--------------GCGAGAu -5'
10944 3' -67.5 NC_002794.1 + 106991 0.76 0.113295
Target:  5'- aCgGCGGUgGCGGCGCUGGCCgacgcgacgguGCUCa- -3'
miRNA:   3'- -GgCGCCGgCGCCGCGGCCGG-----------CGAGau -5'
10944 3' -67.5 NC_002794.1 + 41244 0.76 0.113295
Target:  5'- gCCGCGGCCGCcGaCGCCGGCgGCcCg- -3'
miRNA:   3'- -GGCGCCGGCGcC-GCGGCCGgCGaGau -5'
10944 3' -67.5 NC_002794.1 + 105906 0.76 0.113295
Target:  5'- gCCGCGGCgGCGGCGCUaccGCCGC-Cg- -3'
miRNA:   3'- -GGCGCCGgCGCCGCGGc--CGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 141565 0.76 0.114382
Target:  5'- cCCGCGGCCGCGGCcuccgugaucaugacGCCcgcgucgccgGGCgGCUCg- -3'
miRNA:   3'- -GGCGCCGGCGCCG---------------CGG----------CCGgCGAGau -5'
10944 3' -67.5 NC_002794.1 + 147007 0.76 0.116031
Target:  5'- uCgGCGGCgGCGGcCGCCGGC-GCUCg- -3'
miRNA:   3'- -GgCGCCGgCGCC-GCGGCCGgCGAGau -5'
10944 3' -67.5 NC_002794.1 + 184577 0.75 0.118828
Target:  5'- gCCGCGGCgGCGGCgGCCacgcgcGGCCGCg--- -3'
miRNA:   3'- -GGCGCCGgCGCCG-CGG------CCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 104892 0.75 0.121688
Target:  5'- -gGcCGGCCGCgaGGCGCCGuGCUGCUCg- -3'
miRNA:   3'- ggC-GCCGGCG--CCGCGGC-CGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 21930 0.75 0.123728
Target:  5'- aCgGCGGCggCGCGGCGCucgucgaaggccguCGGCCGCUCc- -3'
miRNA:   3'- -GgCGCCG--GCGCCGCG--------------GCCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 49020 0.75 0.124612
Target:  5'- gCgGCGGCCGCGGCGucguCCGGCgCGgUCg- -3'
miRNA:   3'- -GgCGCCGGCGCCGC----GGCCG-GCgAGau -5'
10944 3' -67.5 NC_002794.1 + 80408 0.75 0.124612
Target:  5'- gCCGCGGCCcagGUGGCGCCgggcggGGCCGC-Cg- -3'
miRNA:   3'- -GGCGCCGG---CGCCGCGG------CCGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 14659 0.75 0.124612
Target:  5'- gCCGCGGCgucgguccgacuCGCGGCGgCGGUCGCgCUGc -3'
miRNA:   3'- -GGCGCCG------------GCGCCGCgGCCGGCGaGAU- -5'
10944 3' -67.5 NC_002794.1 + 137414 0.75 0.1276
Target:  5'- uCCGCGgacGCCGCGgagaccGCGCCGGC-GCUCUGg -3'
miRNA:   3'- -GGCGC---CGGCGC------CGCGGCCGgCGAGAU- -5'
10944 3' -67.5 NC_002794.1 + 11791 0.75 0.130656
Target:  5'- gCCGCGGuguCCGUGGCGCCGccGCCGCcgUCg- -3'
miRNA:   3'- -GGCGCC---GGCGCCGCGGC--CGGCG--AGau -5'
10944 3' -67.5 NC_002794.1 + 180666 0.75 0.133778
Target:  5'- -gGCGuGCCGgGGaacuCGCCGGCCGCUCc- -3'
miRNA:   3'- ggCGC-CGGCgCC----GCGGCCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 56306 0.74 0.136969
Target:  5'- gCGCGGUCGCGGuCGCUGGCgGC-Cg- -3'
miRNA:   3'- gGCGCCGGCGCC-GCGGCCGgCGaGau -5'
10944 3' -67.5 NC_002794.1 + 122200 0.74 0.14023
Target:  5'- aCGCGGCgaaGCGGUGCCGgcGCCGCUa-- -3'
miRNA:   3'- gGCGCCGg--CGCCGCGGC--CGGCGAgau -5'
10944 3' -67.5 NC_002794.1 + 75654 0.74 0.14023
Target:  5'- -aGCGGCaGCGGCGCCGuccGCCGCUa-- -3'
miRNA:   3'- ggCGCCGgCGCCGCGGC---CGGCGAgau -5'
10944 3' -67.5 NC_002794.1 + 104411 0.74 0.143562
Target:  5'- gCCGCGGCCuCGGCcUCGGCCGC-Cg- -3'
miRNA:   3'- -GGCGCCGGcGCCGcGGCCGGCGaGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.