miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 3' -67.5 NC_002794.1 + 105944 0.66 0.473627
Target:  5'- cCCGuUGGCgcuagaggCGCgGGCGCCGGCUuCUCg- -3'
miRNA:   3'- -GGC-GCCG--------GCG-CCGCGGCCGGcGAGau -5'
10944 3' -67.5 NC_002794.1 + 104250 0.66 0.473627
Target:  5'- gCGCGGCCGagGGCcacGCCGaccuccugcGCCGC-CUGu -3'
miRNA:   3'- gGCGCCGGCg-CCG---CGGC---------CGGCGaGAU- -5'
10944 3' -67.5 NC_002794.1 + 96312 0.66 0.473627
Target:  5'- gCCGCGGaaaCCGCGcGCGCCcuCCGCg--- -3'
miRNA:   3'- -GGCGCC---GGCGC-CGCGGccGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 182741 0.66 0.473627
Target:  5'- gCGgGGUCGCcGCG-CGGCuCGCUCg- -3'
miRNA:   3'- gGCgCCGGCGcCGCgGCCG-GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 62963 0.66 0.473627
Target:  5'- gCCGCccGGaCCuGCGGCgGCCGGUCaCUCg- -3'
miRNA:   3'- -GGCG--CC-GG-CGCCG-CGGCCGGcGAGau -5'
10944 3' -67.5 NC_002794.1 + 66650 0.66 0.468498
Target:  5'- -aGCGGCCGaCGGCGguggauaggcgcgaaCgGGCgGCUCc- -3'
miRNA:   3'- ggCGCCGGC-GCCGC---------------GgCCGgCGAGau -5'
10944 3' -67.5 NC_002794.1 + 146784 0.66 0.468498
Target:  5'- cUCGCGGuaccagaagacguacCCGUcGCGCCGGC-GCUCg- -3'
miRNA:   3'- -GGCGCC---------------GGCGcCGCGGCCGgCGAGau -5'
10944 3' -67.5 NC_002794.1 + 113056 0.66 0.465095
Target:  5'- aCGCGcGCCGCGaccCG-CGGCuCGCUCg- -3'
miRNA:   3'- gGCGC-CGGCGCc--GCgGCCG-GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 106932 0.66 0.465095
Target:  5'- cCCGCGGU-GCGGCGauGGCgcgguguaacuCGCUCg- -3'
miRNA:   3'- -GGCGCCGgCGCCGCggCCG-----------GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 11113 0.66 0.465095
Target:  5'- uCCGCgccGGuCCaGCGuuccacggucaGCGCCGGCuCGCUCg- -3'
miRNA:   3'- -GGCG---CC-GG-CGC-----------CGCGGCCG-GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 10296 0.66 0.465095
Target:  5'- cCCGCccuGCCGCGGCagGgCGcGCgGCUCUc -3'
miRNA:   3'- -GGCGc--CGGCGCCG--CgGC-CGgCGAGAu -5'
10944 3' -67.5 NC_002794.1 + 147228 0.66 0.465095
Target:  5'- -aGCGGCCGuCGGgGCCcgcgaGCCGC-Cg- -3'
miRNA:   3'- ggCGCCGGC-GCCgCGGc----CGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 149662 0.66 0.464246
Target:  5'- aCCGCGcucgcucGCCGCcGUuCCGGCCaGCUCg- -3'
miRNA:   3'- -GGCGC-------CGGCGcCGcGGCCGG-CGAGau -5'
10944 3' -67.5 NC_002794.1 + 52119 0.66 0.456644
Target:  5'- cCCGcCGGaCGCGcCGCCGGggggcuCCGCUCg- -3'
miRNA:   3'- -GGC-GCCgGCGCcGCGGCC------GGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 74605 0.66 0.456644
Target:  5'- gCCGCcGCCGCGGCcUCGGCaccguccugGCUCc- -3'
miRNA:   3'- -GGCGcCGGCGCCGcGGCCGg--------CGAGau -5'
10944 3' -67.5 NC_002794.1 + 147261 0.66 0.456644
Target:  5'- gCGCGucGCCGuCGGCGUCGGCCu----- -3'
miRNA:   3'- gGCGC--CGGC-GCCGCGGCCGGcgagau -5'
10944 3' -67.5 NC_002794.1 + 82679 0.66 0.456644
Target:  5'- gCgGCGGUCGCggaGGCGCCuccGCCGC-Cg- -3'
miRNA:   3'- -GgCGCCGGCG---CCGCGGc--CGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 178184 0.66 0.456644
Target:  5'- gCCGcCGGCCcCGGCGgagaCCGaGCCGCa--- -3'
miRNA:   3'- -GGC-GCCGGcGCCGC----GGC-CGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 159429 0.66 0.456644
Target:  5'- -aGCGGaaGaccaGGCGCCGgaGCUGCUCUu -3'
miRNA:   3'- ggCGCCggCg---CCGCGGC--CGGCGAGAu -5'
10944 3' -67.5 NC_002794.1 + 183150 0.66 0.456644
Target:  5'- gCCGUGGgcugcgcguuCCGCGGCGacgagggcCCGGuCCGCUa-- -3'
miRNA:   3'- -GGCGCC----------GGCGCCGC--------GGCC-GGCGAgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.