miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 3' -67.5 NC_002794.1 + 64589 0.66 0.456644
Target:  5'- aCCGcCGGCaccacCGcCGGCGCCG-UCGCUCc- -3'
miRNA:   3'- -GGC-GCCG-----GC-GCCGCGGCcGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 5661 0.66 0.455803
Target:  5'- aCGCGcuccagcGCCGCGcGCacccGCCGGgCGCUCc- -3'
miRNA:   3'- gGCGC-------CGGCGC-CG----CGGCCgGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 182917 0.66 0.448276
Target:  5'- -gGCGGacuuCGUGGCGuuGGCCGUgUCg- -3'
miRNA:   3'- ggCGCCg---GCGCCGCggCCGGCG-AGau -5'
10944 3' -67.5 NC_002794.1 + 137844 0.66 0.448276
Target:  5'- gCCGgGGCCGCcgccGGCgaacccGCCGcGCCGCcCg- -3'
miRNA:   3'- -GGCgCCGGCG----CCG------CGGC-CGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 115341 0.66 0.448276
Target:  5'- gCCGCGGCgCGCGaCGCCuGGCaccggCGcCUCUu -3'
miRNA:   3'- -GGCGCCG-GCGCcGCGG-CCG-----GC-GAGAu -5'
10944 3' -67.5 NC_002794.1 + 58252 0.66 0.448276
Target:  5'- gCCgGCGGUCGCGGCGgCGGUgcccacgacgaCGUcCUGg -3'
miRNA:   3'- -GG-CGCCGGCGCCGCgGCCG-----------GCGaGAU- -5'
10944 3' -67.5 NC_002794.1 + 9470 0.66 0.448276
Target:  5'- gCCGCaGCCGCaGC-CgCGGCCGCa--- -3'
miRNA:   3'- -GGCGcCGGCGcCGcG-GCCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 153211 0.66 0.447444
Target:  5'- gUCGCGGCCGaagccgaCGGCGCC-GCCGg---- -3'
miRNA:   3'- -GGCGCCGGC-------GCCGCGGcCGGCgagau -5'
10944 3' -67.5 NC_002794.1 + 12244 0.66 0.445782
Target:  5'- gCGCGGCCgGCGcccccGCGCCcccgacucgagcagGGCCGCcuUCUc -3'
miRNA:   3'- gGCGCCGG-CGC-----CGCGG--------------CCGGCG--AGAu -5'
10944 3' -67.5 NC_002794.1 + 161124 0.66 0.445782
Target:  5'- -gGCGGCCGCagagcgcgcgacGGCGCggugggacgcggcaCGGCCGCcCg- -3'
miRNA:   3'- ggCGCCGGCG------------CCGCG--------------GCCGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 161000 0.66 0.439993
Target:  5'- gCGgGcGCCGCgGGCGCCGcggacGCCGCg--- -3'
miRNA:   3'- gGCgC-CGGCG-CCGCGGC-----CGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 12000 0.66 0.439993
Target:  5'- gUCGCGGCCGuCGGgGCCa-CCGC-Cg- -3'
miRNA:   3'- -GGCGCCGGC-GCCgCGGccGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 69561 0.66 0.439993
Target:  5'- gCCGCGcGCCugGCGGUGCagCGGagcgugacCCGCUCg- -3'
miRNA:   3'- -GGCGC-CGG--CGCCGCG--GCC--------GGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 104579 0.66 0.439993
Target:  5'- gCGCGGCCuguacguguCGGCGCUGaGCgaggCGCUCUu -3'
miRNA:   3'- gGCGCCGGc--------GCCGCGGC-CG----GCGAGAu -5'
10944 3' -67.5 NC_002794.1 + 47665 0.66 0.439993
Target:  5'- -gGgGGUCucCGGCGCCGGCgcgCGCUCg- -3'
miRNA:   3'- ggCgCCGGc-GCCGCGGCCG---GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 131047 0.66 0.439993
Target:  5'- gCCGCGGaCgGCGGCgaGCCGG-CGC-Cg- -3'
miRNA:   3'- -GGCGCC-GgCGCCG--CGGCCgGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 85507 0.66 0.43917
Target:  5'- gCCGUGGCgacgccucgucguCGuCGGCuCuCGGCCGCUCc- -3'
miRNA:   3'- -GGCGCCG-------------GC-GCCGcG-GCCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 69621 0.66 0.43917
Target:  5'- aCCGUGGCgauCGUGGCGCgcgagguCGGCgGCUggCUGg -3'
miRNA:   3'- -GGCGCCG---GCGCCGCG-------GCCGgCGA--GAU- -5'
10944 3' -67.5 NC_002794.1 + 117909 0.67 0.431799
Target:  5'- gCCGCGaucGCCGCcGuCGCCGaGCCGaCUCc- -3'
miRNA:   3'- -GGCGC---CGGCGcC-GCGGC-CGGC-GAGau -5'
10944 3' -67.5 NC_002794.1 + 133796 0.67 0.431799
Target:  5'- aCGcCGGCgGCGaCGCCGGCgGCg--- -3'
miRNA:   3'- gGC-GCCGgCGCcGCGGCCGgCGagau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.