miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 3' -67.5 NC_002794.1 + 1025 0.69 0.307343
Target:  5'- cUCGCGGCC-CGGCGUCuccaGCCGCaccgUCUGc -3'
miRNA:   3'- -GGCGCCGGcGCCGCGGc---CGGCG----AGAU- -5'
10944 3' -67.5 NC_002794.1 + 1348 0.73 0.185245
Target:  5'- cCCGCGGcCCGCGuGcCGCCGGCCcaGCa--- -3'
miRNA:   3'- -GGCGCC-GGCGC-C-GCGGCCGG--CGagau -5'
10944 3' -67.5 NC_002794.1 + 1845 0.71 0.226961
Target:  5'- uUCGCGGCCGCcGcCGCCGGCgC-CUCg- -3'
miRNA:   3'- -GGCGCCGGCGcC-GCGGCCG-GcGAGau -5'
10944 3' -67.5 NC_002794.1 + 2035 0.71 0.232058
Target:  5'- gCCGaCGcGUCGCGGCGCCGGCa-CUUa- -3'
miRNA:   3'- -GGC-GC-CGGCGCCGCGGCCGgcGAGau -5'
10944 3' -67.5 NC_002794.1 + 3615 0.67 0.415681
Target:  5'- gCCGUcGCCGaCGGCGCgGuuCGCUCg- -3'
miRNA:   3'- -GGCGcCGGC-GCCGCGgCcgGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 4868 0.68 0.347933
Target:  5'- gCGCGG-CGaCGGCGUcgcgauCGGCCGUUCg- -3'
miRNA:   3'- gGCGCCgGC-GCCGCG------GCCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 5118 0.69 0.333989
Target:  5'- cCCGCcGCCGUcucgacgggGGCGgCGGCCGCg--- -3'
miRNA:   3'- -GGCGcCGGCG---------CCGCgGCCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 5503 0.67 0.39221
Target:  5'- gUCGuCGGCCgcGCGGCGCagCGGgUGCUCc- -3'
miRNA:   3'- -GGC-GCCGG--CGCCGCG--GCCgGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 5661 0.66 0.455803
Target:  5'- aCGCGcuccagcGCCGCGcGCacccGCCGGgCGCUCc- -3'
miRNA:   3'- gGCGC-------CGGCGC-CG----CGGCCgGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 6006 0.71 0.247386
Target:  5'- gCCGCGgaGCCGuCGGCGucgucgccgccgaCCGGCCcGCUCg- -3'
miRNA:   3'- -GGCGC--CGGC-GCCGC-------------GGCCGG-CGAGau -5'
10944 3' -67.5 NC_002794.1 + 7501 0.66 0.490921
Target:  5'- cCCGUccGGCCgGCGGCgGCCgaGGgCGUUCUc -3'
miRNA:   3'- -GGCG--CCGG-CGCCG-CGG--CCgGCGAGAu -5'
10944 3' -67.5 NC_002794.1 + 7525 0.68 0.377049
Target:  5'- gCCGCcGCCgGCGGCGCC-GUCGCg--- -3'
miRNA:   3'- -GGCGcCGG-CGCCGCGGcCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 7912 0.66 0.489178
Target:  5'- gCGUGcGCgCGCGaGCGCgggaccucgggaGGCCGCUCa- -3'
miRNA:   3'- gGCGC-CG-GCGC-CGCGg-----------CCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 8272 0.69 0.300307
Target:  5'- gCGCGGCCGCcgucgcgacgcccGGCGUCGcccagaGCCGCUg-- -3'
miRNA:   3'- gGCGCCGGCG-------------CCGCGGC------CGGCGAgau -5'
10944 3' -67.5 NC_002794.1 + 9470 0.66 0.448276
Target:  5'- gCCGCaGCCGCaGC-CgCGGCCGCa--- -3'
miRNA:   3'- -GGCGcCGGCGcCGcG-GCCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 9782 0.67 0.431799
Target:  5'- gCCGCcGCCGCcuuCGCCGGgCGCUUc- -3'
miRNA:   3'- -GGCGcCGGCGcc-GCGGCCgGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 10108 0.68 0.38458
Target:  5'- aCGCGuccaGCCGcCGGCG-CGGCCGCcCg- -3'
miRNA:   3'- gGCGC----CGGC-GCCGCgGCCGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 10296 0.66 0.465095
Target:  5'- cCCGCccuGCCGCGGCagGgCGcGCgGCUCUc -3'
miRNA:   3'- -GGCGc--CGGCGCCG--CgGC-CGgCGAGAu -5'
10944 3' -67.5 NC_002794.1 + 10652 0.67 0.423694
Target:  5'- aUCGCGGCuCGCGccgcggagagucGCGCCGaccGCCGCg--- -3'
miRNA:   3'- -GGCGCCG-GCGC------------CGCGGC---CGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 10914 0.67 0.430984
Target:  5'- gCCGCaGCUGCGccggcccGCGCa-GCCGCUCg- -3'
miRNA:   3'- -GGCGcCGGCGC-------CGCGgcCGGCGAGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.