miRNA display CGI


Results 21 - 40 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 3' -67.5 NC_002794.1 + 11113 0.66 0.465095
Target:  5'- uCCGCgccGGuCCaGCGuuccacggucaGCGCCGGCuCGCUCg- -3'
miRNA:   3'- -GGCG---CC-GG-CGC-----------CGCGGCCG-GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 11675 0.68 0.347933
Target:  5'- aCCGCGGCgCcCGGCGa-GGCcCGCUCc- -3'
miRNA:   3'- -GGCGCCG-GcGCCGCggCCG-GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 11791 0.75 0.130656
Target:  5'- gCCGCGGuguCCGUGGCGCCGccGCCGCcgUCg- -3'
miRNA:   3'- -GGCGCC---GGCGCCGCGGC--CGGCG--AGau -5'
10944 3' -67.5 NC_002794.1 + 11806 0.71 0.221959
Target:  5'- gUCGCgGGCCGCGGCGaagCGGCaCGCg--- -3'
miRNA:   3'- -GGCG-CCGGCGCCGCg--GCCG-GCGagau -5'
10944 3' -67.5 NC_002794.1 + 12000 0.66 0.439993
Target:  5'- gUCGCGGCCGuCGGgGCCa-CCGC-Cg- -3'
miRNA:   3'- -GGCGCCGGC-GCCgCGGccGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 12217 0.73 0.172918
Target:  5'- gCCgGCGGCgucgGCGGCGCCGGCgGCg--- -3'
miRNA:   3'- -GG-CGCCGg---CGCCGCGGCCGgCGagau -5'
10944 3' -67.5 NC_002794.1 + 12244 0.66 0.445782
Target:  5'- gCGCGGCCgGCGcccccGCGCCcccgacucgagcagGGCCGCcuUCUc -3'
miRNA:   3'- gGCGCCGG-CGC-----CGCGG--------------CCGGCG--AGAu -5'
10944 3' -67.5 NC_002794.1 + 12336 0.68 0.362288
Target:  5'- gUCGCGGCCGUGcGCGCCccguCCGCcCg- -3'
miRNA:   3'- -GGCGCCGGCGC-CGCGGcc--GGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 12701 0.68 0.347933
Target:  5'- aCGCGGCCG-GGCuGcCCGaGCCGgUCg- -3'
miRNA:   3'- gGCGCCGGCgCCG-C-GGC-CGGCgAGau -5'
10944 3' -67.5 NC_002794.1 + 12855 0.7 0.276364
Target:  5'- gCCGCGGgcgccCCGCGcGCGCCcGCCGCc--- -3'
miRNA:   3'- -GGCGCC-----GGCGC-CGCGGcCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 13668 0.71 0.242541
Target:  5'- aCGgGGCCuCGGCGCCGGCguCGCg--- -3'
miRNA:   3'- gGCgCCGGcGCCGCGGCCG--GCGagau -5'
10944 3' -67.5 NC_002794.1 + 14099 0.7 0.276364
Target:  5'- cCCGCugacGCCGaUGGCGCCGcGCCGC-Cg- -3'
miRNA:   3'- -GGCGc---CGGC-GCCGCGGC-CGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 14175 0.69 0.327172
Target:  5'- gCGCGGaCCGCcGCGCCucGGCCcacacGCUCg- -3'
miRNA:   3'- gGCGCC-GGCGcCGCGG--CCGG-----CGAGau -5'
10944 3' -67.5 NC_002794.1 + 14325 0.7 0.276364
Target:  5'- cCCGCcGCCgGCGG-GCCGGC-GCUCUc -3'
miRNA:   3'- -GGCGcCGG-CGCCgCGGCCGgCGAGAu -5'
10944 3' -67.5 NC_002794.1 + 14431 0.67 0.431799
Target:  5'- uCCGCGaaGCCGuCGGCGaggGGCCGCcCg- -3'
miRNA:   3'- -GGCGC--CGGC-GCCGCgg-CCGGCGaGau -5'
10944 3' -67.5 NC_002794.1 + 14506 0.74 0.153995
Target:  5'- cCCGCGcUCGCGGCGCuCGuggcGCCGCUCg- -3'
miRNA:   3'- -GGCGCcGGCGCCGCG-GC----CGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 14659 0.75 0.124612
Target:  5'- gCCGCGGCgucgguccgacuCGCGGCGgCGGUCGCgCUGc -3'
miRNA:   3'- -GGCGCCG------------GCGCCGCgGCCGGCGaGAU- -5'
10944 3' -67.5 NC_002794.1 + 14947 0.68 0.377049
Target:  5'- gCCGCGGUcuCGcCGGCGCCgucggaGGUCGgUCUc -3'
miRNA:   3'- -GGCGCCG--GC-GCCGCGG------CCGGCgAGAu -5'
10944 3' -67.5 NC_002794.1 + 16169 0.68 0.377049
Target:  5'- aCgGUGGCgGCGGCgacgguggcgacGCCGGCgGCUacCUGa -3'
miRNA:   3'- -GgCGCCGgCGCCG------------CGGCCGgCGA--GAU- -5'
10944 3' -67.5 NC_002794.1 + 16745 0.72 0.193888
Target:  5'- uCCGCGGuCCG-GGCGCgCGGUCGgUCg- -3'
miRNA:   3'- -GGCGCC-GGCgCCGCG-GCCGGCgAGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.