miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 3' -67.5 NC_002794.1 + 194968 0.7 0.282354
Target:  5'- gCGCgGGCCG-GGUGCCaacGCCGCUCc- -3'
miRNA:   3'- gGCG-CCGGCgCCGCGGc--CGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 193743 0.74 0.157623
Target:  5'- cCCGCGGCUuCGGCgagcgaccGCCGGCCccGCUCg- -3'
miRNA:   3'- -GGCGCCGGcGCCG--------CGGCCGG--CGAGau -5'
10944 3' -67.5 NC_002794.1 + 192657 0.73 0.168975
Target:  5'- gCCGCGcGCuCGCGcgacucgaaGCGCCGGCCGCcgUCg- -3'
miRNA:   3'- -GGCGC-CG-GCGC---------CGCGGCCGGCG--AGau -5'
10944 3' -67.5 NC_002794.1 + 192500 0.68 0.38231
Target:  5'- -gGUGGCCgauucugggaaaaaGCGGaacgaGCCGGCCGcCUCa- -3'
miRNA:   3'- ggCGCCGG--------------CGCCg----CGGCCGGC-GAGau -5'
10944 3' -67.5 NC_002794.1 + 192020 0.77 0.091257
Target:  5'- gCCGCGGCUgcuguuucugugGCGGCGgCGGCUGCUgCUGc -3'
miRNA:   3'- -GGCGCCGG------------CGCCGCgGCCGGCGA-GAU- -5'
10944 3' -67.5 NC_002794.1 + 187757 0.73 0.165112
Target:  5'- uCCGaacGCCGcCGGCGCCGGUCGcCUCg- -3'
miRNA:   3'- -GGCgc-CGGC-GCCGCGGCCGGC-GAGau -5'
10944 3' -67.5 NC_002794.1 + 187061 0.76 0.105445
Target:  5'- cCCGCGGcCCGCcaGGUGCCgcaGGCUGCUCg- -3'
miRNA:   3'- -GGCGCC-GGCG--CCGCGG---CCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 186525 0.69 0.327172
Target:  5'- aCGCGGgUGCGuGCGCCGGCacgaCGgUCg- -3'
miRNA:   3'- gGCGCCgGCGC-CGCGGCCG----GCgAGau -5'
10944 3' -67.5 NC_002794.1 + 186292 0.74 0.157623
Target:  5'- aCCGCGGCCagGCGGCcggucGCCgcGGCgCGCUCg- -3'
miRNA:   3'- -GGCGCCGG--CGCCG-----CGG--CCG-GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 185477 0.73 0.176944
Target:  5'- gCgGCGGCCGCGGCGaggGGaCCGC-CUAu -3'
miRNA:   3'- -GgCGCCGGCGCCGCgg-CC-GGCGaGAU- -5'
10944 3' -67.5 NC_002794.1 + 184577 0.75 0.118828
Target:  5'- gCCGCGGCgGCGGCgGCCacgcgcGGCCGCg--- -3'
miRNA:   3'- -GGCGCCGgCGCCG-CGG------CCGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 183669 0.71 0.237251
Target:  5'- gCCGCGGCCG-GGCGCCGcUCGgaCg- -3'
miRNA:   3'- -GGCGCCGGCgCCGCGGCcGGCgaGau -5'
10944 3' -67.5 NC_002794.1 + 183150 0.66 0.456644
Target:  5'- gCCGUGGgcugcgcguuCCGCGGCGacgagggcCCGGuCCGCUa-- -3'
miRNA:   3'- -GGCGCC----------GGCGCCGC--------GGCC-GGCGAgau -5'
10944 3' -67.5 NC_002794.1 + 182917 0.66 0.448276
Target:  5'- -gGCGGacuuCGUGGCGuuGGCCGUgUCg- -3'
miRNA:   3'- ggCGCCg---GCGCCGCggCCGGCG-AGau -5'
10944 3' -67.5 NC_002794.1 + 182741 0.66 0.473627
Target:  5'- gCGgGGUCGCcGCG-CGGCuCGCUCg- -3'
miRNA:   3'- gGCgCCGGCGcCGCgGCCG-GCGAGau -5'
10944 3' -67.5 NC_002794.1 + 182598 0.67 0.39221
Target:  5'- gCCG-GGCUGUGGUGgagCGGCCGCUg-- -3'
miRNA:   3'- -GGCgCCGGCGCCGCg--GCCGGCGAgau -5'
10944 3' -67.5 NC_002794.1 + 182046 0.66 0.482236
Target:  5'- gCC-CGGCCgGCGGCGaCGGCCucCUCc- -3'
miRNA:   3'- -GGcGCCGG-CGCCGCgGCCGGc-GAGau -5'
10944 3' -67.5 NC_002794.1 + 180666 0.75 0.133778
Target:  5'- -gGCGuGCCGgGGaacuCGCCGGCCGCUCc- -3'
miRNA:   3'- ggCGC-CGGCgCC----GCGGCCGGCGAGau -5'
10944 3' -67.5 NC_002794.1 + 178987 0.67 0.415681
Target:  5'- aCCGCcGCCGCGGCagcaaccaccGCCG-CCGCg--- -3'
miRNA:   3'- -GGCGcCGGCGCCG----------CGGCcGGCGagau -5'
10944 3' -67.5 NC_002794.1 + 178951 0.68 0.347933
Target:  5'- gCCGCGauccgaGCCGCcgacugucgucGGCGCCGaGCCGC-Ca- -3'
miRNA:   3'- -GGCGC------CGGCG-----------CCGCGGC-CGGCGaGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.