Results 1 - 20 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10944 | 3' | -67.5 | NC_002794.1 | + | 127356 | 0.84 | 0.02655 |
Target: 5'- cUCGCGGCgGCGGCG-CGGCCGCUCg- -3' miRNA: 3'- -GGCGCCGgCGCCGCgGCCGGCGAGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 111681 | 0.66 | 0.482236 |
Target: 5'- gCGCucGGCC-CGGCGCuCGGcCCGC-CUc -3' miRNA: 3'- gGCG--CCGGcGCCGCG-GCC-GGCGaGAu -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 128021 | 0.66 | 0.482236 |
Target: 5'- cCCGCcGUCGCccGGCGCCG-CCGCg--- -3' miRNA: 3'- -GGCGcCGGCG--CCGCGGCcGGCGagau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 62963 | 0.66 | 0.473627 |
Target: 5'- gCCGCccGGaCCuGCGGCgGCCGGUCaCUCg- -3' miRNA: 3'- -GGCG--CC-GG-CGCCG-CGGCCGGcGAGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 182741 | 0.66 | 0.473627 |
Target: 5'- gCGgGGUCGCcGCG-CGGCuCGCUCg- -3' miRNA: 3'- gGCgCCGGCGcCGCgGCCG-GCGAGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 127369 | 0.66 | 0.482236 |
Target: 5'- -gGCGGCCGa---GCCGGCCGUgcgggugaUCUGc -3' miRNA: 3'- ggCGCCGGCgccgCGGCCGGCG--------AGAU- -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 182046 | 0.66 | 0.482236 |
Target: 5'- gCC-CGGCCgGCGGCGaCGGCCucCUCc- -3' miRNA: 3'- -GGcGCCGG-CGCCGCgGCCGGc-GAGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 141005 | 0.66 | 0.482236 |
Target: 5'- cCCGUaGGCC--GGCGCgGGCCGC-Cg- -3' miRNA: 3'- -GGCG-CCGGcgCCGCGgCCGGCGaGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 96312 | 0.66 | 0.473627 |
Target: 5'- gCCGCGGaaaCCGCGcGCGCCcuCCGCg--- -3' miRNA: 3'- -GGCGCC---GGCGC-CGCGGccGGCGagau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 83107 | 0.66 | 0.482236 |
Target: 5'- uCCGCGGCgGCGGgGUCGGggugaGgUCUc -3' miRNA: 3'- -GGCGCCGgCGCCgCGGCCgg---CgAGAu -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 117853 | 0.66 | 0.488308 |
Target: 5'- uUC-CGGCgGCGGCGCCGucgggagaacgcccGCCGC-Cg- -3' miRNA: 3'- -GGcGCCGgCGCCGCGGC--------------CGGCGaGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 7912 | 0.66 | 0.489178 |
Target: 5'- gCGUGcGCgCGCGaGCGCgggaccucgggaGGCCGCUCa- -3' miRNA: 3'- gGCGC-CG-GCGC-CGCGg-----------CCGGCGAGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 7501 | 0.66 | 0.490921 |
Target: 5'- cCCGUccGGCCgGCGGCgGCCgaGGgCGUUCUc -3' miRNA: 3'- -GGCG--CCGG-CGCCG-CGG--CCgGCGAGAu -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 137544 | 0.66 | 0.490921 |
Target: 5'- gCCGCGcucugcacGCCGCGcGUGCuCGucgggaaccuGCCGCUCg- -3' miRNA: 3'- -GGCGC--------CGGCGC-CGCG-GC----------CGGCGAGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 89606 | 0.66 | 0.490921 |
Target: 5'- gCCGCGaaccggcgagcGCCGC-GCGUCGcGCCGcCUCg- -3' miRNA: 3'- -GGCGC-----------CGGCGcCGCGGC-CGGC-GAGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 48708 | 0.66 | 0.490921 |
Target: 5'- cCCGgGGCCGCGaGgGCCaGCUGgaCc- -3' miRNA: 3'- -GGCgCCGGCGC-CgCGGcCGGCgaGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 71883 | 0.66 | 0.490921 |
Target: 5'- aCGuCGaccacGCCGUGGCGCCGGUCa-UCUAc -3' miRNA: 3'- gGC-GC-----CGGCGCCGCGGCCGGcgAGAU- -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 104638 | 0.66 | 0.490921 |
Target: 5'- gCGaCGGCgGaCGGCGCggCGGCCGUcgggCUGc -3' miRNA: 3'- gGC-GCCGgC-GCCGCG--GCCGGCGa---GAU- -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 176596 | 0.66 | 0.490921 |
Target: 5'- gCCGCGGCCcccGUGGCGCgucuccUGGCCuggagcCUCg- -3' miRNA: 3'- -GGCGCCGG---CGCCGCG------GCCGGc-----GAGau -5' |
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10944 | 3' | -67.5 | NC_002794.1 | + | 79394 | 0.66 | 0.490921 |
Target: 5'- -aGCGGCCGguucuUGGUGCCGGCguaGCg--- -3' miRNA: 3'- ggCGCCGGC-----GCCGCGGCCGg--CGagau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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