miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 5' -52.1 NC_002794.1 + 190291 0.66 0.997636
Target:  5'- gUCCGUGUcgaaGCGCCGGCGgCcGAACa- -3'
miRNA:   3'- gGGGCACA----UGCGGUUGCaGcUUUGcc -5'
10944 5' -52.1 NC_002794.1 + 87871 0.66 0.997636
Target:  5'- aCCCGUGUGCGUaua-GUCGcgcACGu -3'
miRNA:   3'- gGGGCACAUGCGguugCAGCuu-UGCc -5'
10944 5' -52.1 NC_002794.1 + 141296 0.66 0.997636
Target:  5'- gCCacaCGUGgcGCGCCGgcgacggcaccgGCGUCGGcuCGGu -3'
miRNA:   3'- -GGg--GCACa-UGCGGU------------UGCAGCUuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 151027 0.66 0.997636
Target:  5'- gCCCGUGguCGCC--CGUCuGAuGACGGg -3'
miRNA:   3'- gGGGCACauGCGGuuGCAG-CU-UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 85166 0.66 0.997597
Target:  5'- aCCCGaUGUGCGCgGACa-CGGacgcccgacgcccGACGGg -3'
miRNA:   3'- gGGGC-ACAUGCGgUUGcaGCU-------------UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 139435 0.66 0.997597
Target:  5'- gUCUCGUGUccgcgcGCGCCGAucggcagguCGUCGugcgccaGGACGGu -3'
miRNA:   3'- -GGGGCACA------UGCGGUU---------GCAGC-------UUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 14050 0.66 0.997218
Target:  5'- aUCCU---UACGCCGACGgCGAuccuGGCGGa -3'
miRNA:   3'- -GGGGcacAUGCGGUUGCaGCU----UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 35090 0.66 0.997218
Target:  5'- gCCCgagauCGUGgACGUCAGCGUgacCGAGAacCGGg -3'
miRNA:   3'- -GGG-----GCACaUGCGGUUGCA---GCUUU--GCC- -5'
10944 5' -52.1 NC_002794.1 + 91064 0.66 0.997218
Target:  5'- gCgUCGUcauGUACGCCGugGUgGGcuACGGg -3'
miRNA:   3'- -GgGGCA---CAUGCGGUugCAgCUu-UGCC- -5'
10944 5' -52.1 NC_002794.1 + 99959 0.66 0.997218
Target:  5'- aCCgCCGacggcgccagucUGUGCGUCAACGUCuu--CGGc -3'
miRNA:   3'- -GG-GGC------------ACAUGCGGUUGCAGcuuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 90985 0.66 0.997218
Target:  5'- gCCUCGUaccGgGCCGAgG-CGGAGCGGg -3'
miRNA:   3'- -GGGGCAca-UgCGGUUgCaGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 122266 0.66 0.997218
Target:  5'- --aCGUGaacgagauCGCCAACGUCcuGGACGGg -3'
miRNA:   3'- gggGCACau------GCGGUUGCAGc-UUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 8038 0.66 0.997218
Target:  5'- gUCCCGaGgaagACGCCGcacCGUCuuGGCGGg -3'
miRNA:   3'- -GGGGCaCa---UGCGGUu--GCAGcuUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 115949 0.66 0.997218
Target:  5'- gCCgCGUGU-CGCCGGggacCGUgggggggagCGGGACGGg -3'
miRNA:   3'- -GGgGCACAuGCGGUU----GCA---------GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 98390 0.66 0.99674
Target:  5'- -aUCGcGUugGCCAaguGCGUCGAGgucgaucaggauACGGu -3'
miRNA:   3'- ggGGCaCAugCGGU---UGCAGCUU------------UGCC- -5'
10944 5' -52.1 NC_002794.1 + 96972 0.66 0.99674
Target:  5'- aCCaCCGUGccuCGCgAGCG-CGucACGGg -3'
miRNA:   3'- -GG-GGCACau-GCGgUUGCaGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 101270 0.66 0.99674
Target:  5'- cCCCCG---GCGCCggUGgCGGcGGCGGg -3'
miRNA:   3'- -GGGGCacaUGCGGuuGCaGCU-UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 135466 0.66 0.99674
Target:  5'- gCCCGcGgccgacgacgACGCCGcCGUCGAcgcgcGCGGg -3'
miRNA:   3'- gGGGCaCa---------UGCGGUuGCAGCUu----UGCC- -5'
10944 5' -52.1 NC_002794.1 + 129504 0.66 0.99674
Target:  5'- uUCCGUGU-CGCCGccGCgGUCGgcGCGc -3'
miRNA:   3'- gGGGCACAuGCGGU--UG-CAGCuuUGCc -5'
10944 5' -52.1 NC_002794.1 + 12275 0.66 0.99674
Target:  5'- uCUCCGgGUuuccGCGCCugggUGUCcGAAACGGg -3'
miRNA:   3'- -GGGGCaCA----UGCGGuu--GCAG-CUUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.