Results 1 - 20 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10944 | 5' | -52.1 | NC_002794.1 | + | 12275 | 0.66 | 0.99674 |
Target: 5'- uCUCCGgGUuuccGCGCCugggUGUCcGAAACGGg -3' miRNA: 3'- -GGGGCaCA----UGCGGuu--GCAG-CUUUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 35090 | 0.66 | 0.997218 |
Target: 5'- gCCCgagauCGUGgACGUCAGCGUgacCGAGAacCGGg -3' miRNA: 3'- -GGG-----GCACaUGCGGUUGCA---GCUUU--GCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 107516 | 0.66 | 0.99674 |
Target: 5'- gCCgGUcgACGCCGACGgcCGgcGCGGc -3' miRNA: 3'- gGGgCAcaUGCGGUUGCa-GCuuUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 129504 | 0.66 | 0.99674 |
Target: 5'- uUCCGUGU-CGCCGccGCgGUCGgcGCGc -3' miRNA: 3'- gGGGCACAuGCGGU--UG-CAGCuuUGCc -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 135466 | 0.66 | 0.99674 |
Target: 5'- gCCCGcGgccgacgacgACGCCGcCGUCGAcgcgcGCGGg -3' miRNA: 3'- gGGGCaCa---------UGCGGUuGCAGCUu----UGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 14050 | 0.66 | 0.997218 |
Target: 5'- aUCCU---UACGCCGACGgCGAuccuGGCGGa -3' miRNA: 3'- -GGGGcacAUGCGGUUGCaGCU----UUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 101270 | 0.66 | 0.99674 |
Target: 5'- cCCCCG---GCGCCggUGgCGGcGGCGGg -3' miRNA: 3'- -GGGGCacaUGCGGuuGCaGCU-UUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 96972 | 0.66 | 0.99674 |
Target: 5'- aCCaCCGUGccuCGCgAGCG-CGucACGGg -3' miRNA: 3'- -GG-GGCACau-GCGgUUGCaGCuuUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 98390 | 0.66 | 0.99674 |
Target: 5'- -aUCGcGUugGCCAaguGCGUCGAGgucgaucaggauACGGu -3' miRNA: 3'- ggGGCaCAugCGGU---UGCAGCUU------------UGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 91064 | 0.66 | 0.997218 |
Target: 5'- gCgUCGUcauGUACGCCGugGUgGGcuACGGg -3' miRNA: 3'- -GgGGCA---CAUGCGGUugCAgCUu-UGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 99959 | 0.66 | 0.997218 |
Target: 5'- aCCgCCGacggcgccagucUGUGCGUCAACGUCuu--CGGc -3' miRNA: 3'- -GG-GGC------------ACAUGCGGUUGCAGcuuuGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 90985 | 0.66 | 0.997218 |
Target: 5'- gCCUCGUaccGgGCCGAgG-CGGAGCGGg -3' miRNA: 3'- -GGGGCAca-UgCGGUUgCaGCUUUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 87871 | 0.66 | 0.997636 |
Target: 5'- aCCCGUGUGCGUaua-GUCGcgcACGu -3' miRNA: 3'- gGGGCACAUGCGguugCAGCuu-UGCc -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 141296 | 0.66 | 0.997636 |
Target: 5'- gCCacaCGUGgcGCGCCGgcgacggcaccgGCGUCGGcuCGGu -3' miRNA: 3'- -GGg--GCACa-UGCGGU------------UGCAGCUuuGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 151027 | 0.66 | 0.997636 |
Target: 5'- gCCCGUGguCGCC--CGUCuGAuGACGGg -3' miRNA: 3'- gGGGCACauGCGGuuGCAG-CU-UUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 139435 | 0.66 | 0.997597 |
Target: 5'- gUCUCGUGUccgcgcGCGCCGAucggcagguCGUCGugcgccaGGACGGu -3' miRNA: 3'- -GGGGCACA------UGCGGUU---------GCAGC-------UUUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 85166 | 0.66 | 0.997597 |
Target: 5'- aCCCGaUGUGCGCgGACa-CGGacgcccgacgcccGACGGg -3' miRNA: 3'- gGGGC-ACAUGCGgUUGcaGCU-------------UUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 115949 | 0.66 | 0.997218 |
Target: 5'- gCCgCGUGU-CGCCGGggacCGUgggggggagCGGGACGGg -3' miRNA: 3'- -GGgGCACAuGCGGUU----GCA---------GCUUUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 8038 | 0.66 | 0.997218 |
Target: 5'- gUCCCGaGgaagACGCCGcacCGUCuuGGCGGg -3' miRNA: 3'- -GGGGCaCa---UGCGGUu--GCAGcuUUGCC- -5' |
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10944 | 5' | -52.1 | NC_002794.1 | + | 122266 | 0.66 | 0.997218 |
Target: 5'- --aCGUGaacgagauCGCCAACGUCcuGGACGGg -3' miRNA: 3'- gggGCACau------GCGGUUGCAGc-UUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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