miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 5' -52.1 NC_002794.1 + 34831 0.79 0.590893
Target:  5'- cCCUCGccgGCGCCGgagcggGCGUCGGAGCGGg -3'
miRNA:   3'- -GGGGCacaUGCGGU------UGCAGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 14266 0.78 0.640044
Target:  5'- aCCCCGaccgaggUGUucggcuggaGCGUCAGCGUCGAGgcGCGGg -3'
miRNA:   3'- -GGGGC-------ACA---------UGCGGUUGCAGCUU--UGCC- -5'
10944 5' -52.1 NC_002794.1 + 36790 0.76 0.749336
Target:  5'- gCCgCCGUGUACGCCGAgGUCaGGugcuGCGa -3'
miRNA:   3'- -GG-GGCACAUGCGGUUgCAG-CUu---UGCc -5'
10944 5' -52.1 NC_002794.1 + 183927 0.76 0.758758
Target:  5'- uCCCCGgcaggGUcacCGCCAcgaACGUCGAcGCGGu -3'
miRNA:   3'- -GGGGCa----CAu--GCGGU---UGCAGCUuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 112345 0.76 0.758758
Target:  5'- -gCCGgcgGCGCCGGCGgCGggGCGGg -3'
miRNA:   3'- ggGGCacaUGCGGUUGCaGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 44524 0.75 0.777269
Target:  5'- gCCCGUGUccgcgagcGCGCCGuCGUCGucgccGGCGGc -3'
miRNA:   3'- gGGGCACA--------UGCGGUuGCAGCu----UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 141578 0.75 0.777269
Target:  5'- cCUCCGUGaucaugACGCCcGCGUCGccGGGCGGc -3'
miRNA:   3'- -GGGGCACa-----UGCGGuUGCAGC--UUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 181160 0.74 0.829534
Target:  5'- gCCCGUccgccGCGCCGACGgCGAAcgGCGGa -3'
miRNA:   3'- gGGGCAca---UGCGGUUGCaGCUU--UGCC- -5'
10944 5' -52.1 NC_002794.1 + 66839 0.74 0.837684
Target:  5'- aCUCCGg--GCGCCGcCGUCGgcGCGGc -3'
miRNA:   3'- -GGGGCacaUGCGGUuGCAGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 58053 0.74 0.837684
Target:  5'- uCCCCGUcgGCGgccCCGGCGgcggCGGGACGGg -3'
miRNA:   3'- -GGGGCAcaUGC---GGUUGCa---GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 86914 0.74 0.845654
Target:  5'- aCCCgGUG-ACGCCcguGGCGggcaggCGggGCGGg -3'
miRNA:   3'- -GGGgCACaUGCGG---UUGCa-----GCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 89975 0.73 0.861026
Target:  5'- -aCCGUGgUGCGCCGGCGUuCGAc-CGGu -3'
miRNA:   3'- ggGGCAC-AUGCGGUUGCA-GCUuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 43888 0.73 0.861026
Target:  5'- aCCCGgccGU-CGCCGGCGUCucgugaGGAGCGGc -3'
miRNA:   3'- gGGGCa--CAuGCGGUUGCAG------CUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 67372 0.73 0.871316
Target:  5'- gCCaCGUGUcgaaagaacgcgucgGCGCCAGCGUCGGcgccAGCGu -3'
miRNA:   3'- gGG-GCACA---------------UGCGGUUGCAGCU----UUGCc -5'
10944 5' -52.1 NC_002794.1 + 116946 0.73 0.882578
Target:  5'- uCCCCGgcgGcgGCGUCGGCGggcgcaGGAACGGg -3'
miRNA:   3'- -GGGGCa--Ca-UGCGGUUGCag----CUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 132259 0.72 0.904672
Target:  5'- aUCCUGUGgcuCGCCAcagccuguuucgucuACGUCGAcuCGGu -3'
miRNA:   3'- -GGGGCACau-GCGGU---------------UGCAGCUuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 136708 0.72 0.908303
Target:  5'- gCCCgGUGcagGCGCCGgucccgGCGUCcAGGCGGu -3'
miRNA:   3'- -GGGgCACa--UGCGGU------UGCAGcUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 36364 0.72 0.908303
Target:  5'- gCCaCCGgGUgcGCGCCcGCGgCGAAGCGGu -3'
miRNA:   3'- -GG-GGCaCA--UGCGGuUGCaGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 23447 0.72 0.914173
Target:  5'- aCgUGaUGUACGUCcggaucGACGUCGggGCGGa -3'
miRNA:   3'- gGgGC-ACAUGCGG------UUGCAGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 182197 0.72 0.919815
Target:  5'- gCCUCG---GCGCCGGCGUCGcgccACGGg -3'
miRNA:   3'- -GGGGCacaUGCGGUUGCAGCuu--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.