miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 5' -52.1 NC_002794.1 + 53247 0.72 0.919815
Target:  5'- gCCCGcc-GCGCCGGCGUCGccgcgcgacAACGGg -3'
miRNA:   3'- gGGGCacaUGCGGUUGCAGCu--------UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 182197 0.72 0.919815
Target:  5'- gCCUCG---GCGCCGGCGUCGcgccACGGg -3'
miRNA:   3'- -GGGGCacaUGCGGUUGCAGCuu--UGCC- -5'
10944 5' -52.1 NC_002794.1 + 79975 0.71 0.930407
Target:  5'- cCCCCGgcu-CGgCGACGagGAGGCGGa -3'
miRNA:   3'- -GGGGCacauGCgGUUGCagCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 99202 0.71 0.940079
Target:  5'- uCCCCGcccccGUACGCCgAGCG-CGAuucguauaagAGCGGa -3'
miRNA:   3'- -GGGGCa----CAUGCGG-UUGCaGCU----------UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 135821 0.71 0.940079
Target:  5'- cCCCCGUcaugaucucuUGCGUCGGCGUCGuc-CGGa -3'
miRNA:   3'- -GGGGCAc---------AUGCGGUUGCAGCuuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 20737 0.71 0.946306
Target:  5'- aCCCUGUGcgacgcgcugaucCGCCAGCucUCGGAACGGc -3'
miRNA:   3'- -GGGGCACau-----------GCGGUUGc-AGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 32670 0.7 0.95558
Target:  5'- uCCCCGUcGUcCGCCAaccguccuccggagGCGUCGcGGGCGa -3'
miRNA:   3'- -GGGGCA-CAuGCGGU--------------UGCAGC-UUUGCc -5'
10944 5' -52.1 NC_002794.1 + 128841 0.7 0.956703
Target:  5'- aUCCUGa--GCGCCGGCGUCGAcGACGc -3'
miRNA:   3'- -GGGGCacaUGCGGUUGCAGCU-UUGCc -5'
10944 5' -52.1 NC_002794.1 + 110350 0.7 0.956703
Target:  5'- uCCgCCGUGgcgACGCCucguCGUCGu--CGGc -3'
miRNA:   3'- -GG-GGCACa--UGCGGuu--GCAGCuuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 66398 0.7 0.960308
Target:  5'- uCCCCGUcGUccCGCCGAcCGUgCGaAGACGGc -3'
miRNA:   3'- -GGGGCA-CAu-GCGGUU-GCA-GC-UUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 840 0.7 0.960308
Target:  5'- uCCCCGgcgcGUGCGuucggcCCAGCGcgcgcccgCGAGGCGGu -3'
miRNA:   3'- -GGGGCa---CAUGC------GGUUGCa-------GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 59189 0.7 0.963701
Target:  5'- aCCCCGUGgcggucgACGCgcACGUCGGcgucuCGGc -3'
miRNA:   3'- -GGGGCACa------UGCGguUGCAGCUuu---GCC- -5'
10944 5' -52.1 NC_002794.1 + 68971 0.7 0.963701
Target:  5'- cCUCCGcgGgccgcgACGCCGGCGUCGAcGCu- -3'
miRNA:   3'- -GGGGCa-Ca-----UGCGGUUGCAGCUuUGcc -5'
10944 5' -52.1 NC_002794.1 + 178211 0.7 0.963701
Target:  5'- cCCUCG-GUA-GCCucgGCGUaCGAAACGGa -3'
miRNA:   3'- -GGGGCaCAUgCGGu--UGCA-GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 123986 0.7 0.966576
Target:  5'- aCgCCGUG-GCGCCGgucaucuACGU-GAAGCGGg -3'
miRNA:   3'- -GgGGCACaUGCGGU-------UGCAgCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 66528 0.7 0.966885
Target:  5'- uCCCCGgGUcCGCgAAgGUCGGcgccGGCGGa -3'
miRNA:   3'- -GGGGCaCAuGCGgUUgCAGCU----UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 55340 0.7 0.966885
Target:  5'- aCCCGggGUcGCGCCcgaGGCGgcCGAGGCGGc -3'
miRNA:   3'- gGGGCa-CA-UGCGG---UUGCa-GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 126603 0.7 0.966885
Target:  5'- gCgCCGaGgccgGCGCCGACGUCGcgGCGu -3'
miRNA:   3'- -GgGGCaCa---UGCGGUUGCAGCuuUGCc -5'
10944 5' -52.1 NC_002794.1 + 108305 0.7 0.966885
Target:  5'- aUCCCGU-UGCGCCGGCGgUGGgucuugGACGGc -3'
miRNA:   3'- -GGGGCAcAUGCGGUUGCaGCU------UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 84338 0.69 0.969578
Target:  5'- gCCUCGaccgaacgGgaaaACGCCGACGUCGAcgccgacAGCGGc -3'
miRNA:   3'- -GGGGCa-------Ca---UGCGGUUGCAGCU-------UUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.