miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 5' -52.1 NC_002794.1 + 107516 0.66 0.99674
Target:  5'- gCCgGUcgACGCCGACGgcCGgcGCGGc -3'
miRNA:   3'- gGGgCAcaUGCGGUUGCa-GCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 82570 0.66 0.996196
Target:  5'- -gCCGgcgAgGCCGACGccgcCGAGACGGa -3'
miRNA:   3'- ggGGCacaUgCGGUUGCa---GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 19521 0.66 0.99558
Target:  5'- gCUCG-GaGCGCCGGCG-CGgcGCGGc -3'
miRNA:   3'- gGGGCaCaUGCGGUUGCaGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 18877 0.66 0.99558
Target:  5'- gCCaCCG---ACGCCGGCG-CGGAGCGu -3'
miRNA:   3'- -GG-GGCacaUGCGGUUGCaGCUUUGCc -5'
10944 5' -52.1 NC_002794.1 + 93990 0.66 0.99558
Target:  5'- gCUCGgcgcggACGCCGGCGcCGGcGGCGGg -3'
miRNA:   3'- gGGGCaca---UGCGGUUGCaGCU-UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 3997 0.66 0.99558
Target:  5'- aCCCGgaccACGCCucuucauCGUCGGAGCa- -3'
miRNA:   3'- gGGGCaca-UGCGGuu-----GCAGCUUUGcc -5'
10944 5' -52.1 NC_002794.1 + 81317 0.66 0.995514
Target:  5'- cUCCCGUcggccaagccgcgGUACGCUccgcCGUCGccGACGGg -3'
miRNA:   3'- -GGGGCA-------------CAUGCGGuu--GCAGCu-UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 183539 0.66 0.995173
Target:  5'- gCCCCGUccgcccggggacacuGcGCGCCGAgcCGcCGAcACGGg -3'
miRNA:   3'- -GGGGCA---------------CaUGCGGUU--GCaGCUuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 68307 0.66 0.994885
Target:  5'- gCCUCGUGgcgGCCGACG-CGuuccGCGGc -3'
miRNA:   3'- -GGGGCACaugCGGUUGCaGCuu--UGCC- -5'
10944 5' -52.1 NC_002794.1 + 26071 0.66 0.994885
Target:  5'- cCCCCGcGcACGCC-ACG-CGggGCa- -3'
miRNA:   3'- -GGGGCaCaUGCGGuUGCaGCuuUGcc -5'
10944 5' -52.1 NC_002794.1 + 11960 0.66 0.994885
Target:  5'- uCUCCGUcUACGCU--CGUgGAGAUGGc -3'
miRNA:   3'- -GGGGCAcAUGCGGuuGCAgCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 63642 0.66 0.994885
Target:  5'- aCCUCGUcugcGUGacCGCCAACGUCu---CGGa -3'
miRNA:   3'- -GGGGCA----CAU--GCGGUUGCAGcuuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 65976 0.66 0.994885
Target:  5'- cCUCCG---GCaCCAACGUCGAAcuggGCGGu -3'
miRNA:   3'- -GGGGCacaUGcGGUUGCAGCUU----UGCC- -5'
10944 5' -52.1 NC_002794.1 + 30397 0.66 0.994885
Target:  5'- gCCCgcgaCGUG-AUGCCGugGUCG-AACGu -3'
miRNA:   3'- -GGG----GCACaUGCGGUugCAGCuUUGCc -5'
10944 5' -52.1 NC_002794.1 + 183672 0.66 0.994885
Target:  5'- gCCCGa--GCGCCGACGggUCGAGcgcccgccgcgcGCGGc -3'
miRNA:   3'- gGGGCacaUGCGGUUGC--AGCUU------------UGCC- -5'
10944 5' -52.1 NC_002794.1 + 130449 0.66 0.994885
Target:  5'- gUCCGUGUugGgCGGCGaggCGcuGGCGGc -3'
miRNA:   3'- gGGGCACAugCgGUUGCa--GCu-UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 141895 0.66 0.994885
Target:  5'- cUCCCGUccaGgcgacGCGCCGuucuCG-CGGAACGGa -3'
miRNA:   3'- -GGGGCA---Ca----UGCGGUu---GCaGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 122676 0.66 0.994811
Target:  5'- gCCCGgcUGUgccggucGCGCCAGCGcCGGgcGACGu -3'
miRNA:   3'- gGGGC--ACA-------UGCGGUUGCaGCU--UUGCc -5'
10944 5' -52.1 NC_002794.1 + 123395 0.67 0.994427
Target:  5'- aCCCUGcUGcuccGCGUCGGCGUggaguacgacagcgaCGAGGCGGu -3'
miRNA:   3'- -GGGGC-ACa---UGCGGUUGCA---------------GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 66364 0.67 0.994103
Target:  5'- gUCCCaGUcGU-CGCCGcucuCGUCGAAcGCGGg -3'
miRNA:   3'- -GGGG-CA-CAuGCGGUu---GCAGCUU-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.