miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 5' -52.1 NC_002794.1 + 106410 0.67 0.994103
Target:  5'- aCCCCGgcgGCGCCGGggcucauggcgcUGUUGGAgaagGCGGu -3'
miRNA:   3'- -GGGGCacaUGCGGUU------------GCAGCUU----UGCC- -5'
10944 5' -52.1 NC_002794.1 + 150530 0.67 0.994103
Target:  5'- gCCCCGUagccgGgccgGCGCCAugGcCGucuCGGc -3'
miRNA:   3'- -GGGGCA-----Ca---UGCGGUugCaGCuuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 114216 0.67 0.994103
Target:  5'- uCUCCGgcgGCaGCCAgccgaucagcGCGUCGAggUGGu -3'
miRNA:   3'- -GGGGCacaUG-CGGU----------UGCAGCUuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 99776 0.67 0.994103
Target:  5'- gCCCGcgGU--GCCGGCGUCGAcuACGa -3'
miRNA:   3'- gGGGCa-CAugCGGUUGCAGCUu-UGCc -5'
10944 5' -52.1 NC_002794.1 + 66364 0.67 0.994103
Target:  5'- gUCCCaGUcGU-CGCCGcucuCGUCGAAcGCGGg -3'
miRNA:   3'- -GGGG-CA-CAuGCGGUu---GCAGCUU-UGCC- -5'
10944 5' -52.1 NC_002794.1 + 105675 0.67 0.994103
Target:  5'- gCCCGgac-CGCCGggaACGUCGGAACc- -3'
miRNA:   3'- gGGGCacauGCGGU---UGCAGCUUUGcc -5'
10944 5' -52.1 NC_002794.1 + 108153 0.67 0.99402
Target:  5'- gCCgCCGgGaGCGCCGGCG-CGAAgacgccgcgacgcGCGGa -3'
miRNA:   3'- -GG-GGCaCaUGCGGUUGCaGCUU-------------UGCC- -5'
10944 5' -52.1 NC_002794.1 + 149268 0.67 0.993229
Target:  5'- cCCUCGUcccCGCCGGCGgCGcgGCGGc -3'
miRNA:   3'- -GGGGCAcauGCGGUUGCaGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 67206 0.67 0.993229
Target:  5'- gUCCGggcgGUGCGCuCGGCGcCG-GGCGGc -3'
miRNA:   3'- gGGGCa---CAUGCG-GUUGCaGCuUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 109518 0.67 0.993229
Target:  5'- gCCCGgcccGCGCUcguucGGCGUCGGGcCGGg -3'
miRNA:   3'- gGGGCaca-UGCGG-----UUGCAGCUUuGCC- -5'
10944 5' -52.1 NC_002794.1 + 111549 0.67 0.992253
Target:  5'- aCCCGUacagGUacuccgGCGCCAGCG-CGGucacuACGGu -3'
miRNA:   3'- gGGGCA----CA------UGCGGUUGCaGCUu----UGCC- -5'
10944 5' -52.1 NC_002794.1 + 110557 0.67 0.992253
Target:  5'- gCUCCGcGUcguCGCCGuCGUCGAu-CGGg -3'
miRNA:   3'- -GGGGCaCAu--GCGGUuGCAGCUuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 147109 0.67 0.99194
Target:  5'- gCCCGgcccaaggacgaagACGUCGACGgcgguUCGAGACGGc -3'
miRNA:   3'- gGGGCaca-----------UGCGGUUGC-----AGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 75468 0.67 0.991169
Target:  5'- gCCCCGU--AC-CaCGGCGcCGAGACGGc -3'
miRNA:   3'- -GGGGCAcaUGcG-GUUGCaGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 129255 0.67 0.991169
Target:  5'- aCUCGgGUcgaGCGCCu-CGUCGuGAGCGGg -3'
miRNA:   3'- gGGGCaCA---UGCGGuuGCAGC-UUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 111744 0.67 0.991169
Target:  5'- gCUCGUcgagcugGCGCCGcgcggcgcCGUCGggGCGGg -3'
miRNA:   3'- gGGGCAca-----UGCGGUu-------GCAGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 40599 0.67 0.989969
Target:  5'- cCUCCGaGUcguCGCCGGCGUcCGAcuccGCGGa -3'
miRNA:   3'- -GGGGCaCAu--GCGGUUGCA-GCUu---UGCC- -5'
10944 5' -52.1 NC_002794.1 + 72470 0.68 0.988783
Target:  5'- gCCCCGcGgcgGCGCCGAaaagacgaucacgcaGUCGGGcacGCGGc -3'
miRNA:   3'- -GGGGCaCa--UGCGGUUg--------------CAGCUU---UGCC- -5'
10944 5' -52.1 NC_002794.1 + 127628 0.68 0.988645
Target:  5'- aCUCGUcGUcgACGCCGACGacCGAgacccGACGGg -3'
miRNA:   3'- gGGGCA-CA--UGCGGUUGCa-GCU-----UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 110591 0.68 0.988645
Target:  5'- -gCCGaagggGUGCGUgAACGUgaagCGGAGCGGg -3'
miRNA:   3'- ggGGCa----CAUGCGgUUGCA----GCUUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.