miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 5' -52.1 NC_002794.1 + 840 0.7 0.960308
Target:  5'- uCCCCGgcgcGUGCGuucggcCCAGCGcgcgcccgCGAGGCGGu -3'
miRNA:   3'- -GGGGCa---CAUGC------GGUUGCa-------GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 3997 0.66 0.99558
Target:  5'- aCCCGgaccACGCCucuucauCGUCGGAGCa- -3'
miRNA:   3'- gGGGCaca-UGCGGuu-----GCAGCUUUGcc -5'
10944 5' -52.1 NC_002794.1 + 4222 0.69 0.969867
Target:  5'- aCCgGUGUGgGCgugucuaGACGUCGguGCGGc -3'
miRNA:   3'- gGGgCACAUgCGg------UUGCAGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 8038 0.66 0.997218
Target:  5'- gUCCCGaGgaagACGCCGcacCGUCuuGGCGGg -3'
miRNA:   3'- -GGGGCaCa---UGCGGUu--GCAGcuUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 11960 0.66 0.994885
Target:  5'- uCUCCGUcUACGCU--CGUgGAGAUGGc -3'
miRNA:   3'- -GGGGCAcAUGCGGuuGCAgCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 12275 0.66 0.99674
Target:  5'- uCUCCGgGUuuccGCGCCugggUGUCcGAAACGGg -3'
miRNA:   3'- -GGGGCaCA----UGCGGuu--GCAG-CUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 14050 0.66 0.997218
Target:  5'- aUCCU---UACGCCGACGgCGAuccuGGCGGa -3'
miRNA:   3'- -GGGGcacAUGCGGUUGCaGCU----UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 14266 0.78 0.640044
Target:  5'- aCCCCGaccgaggUGUucggcuggaGCGUCAGCGUCGAGgcGCGGg -3'
miRNA:   3'- -GGGGC-------ACA---------UGCGGUUGCAGCUU--UGCC- -5'
10944 5' -52.1 NC_002794.1 + 18877 0.66 0.99558
Target:  5'- gCCaCCG---ACGCCGGCG-CGGAGCGu -3'
miRNA:   3'- -GG-GGCacaUGCGGUUGCaGCUUUGCc -5'
10944 5' -52.1 NC_002794.1 + 19521 0.66 0.99558
Target:  5'- gCUCG-GaGCGCCGGCG-CGgcGCGGc -3'
miRNA:   3'- gGGGCaCaUGCGGUUGCaGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 20737 0.71 0.946306
Target:  5'- aCCCUGUGcgacgcgcugaucCGCCAGCucUCGGAACGGc -3'
miRNA:   3'- -GGGGCACau-----------GCGGUUGc-AGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 21244 0.68 0.988645
Target:  5'- aCCCCGUGaaaGCCGACcgaaCGAAggaccggaucGCGGg -3'
miRNA:   3'- -GGGGCACaugCGGUUGca--GCUU----------UGCC- -5'
10944 5' -52.1 NC_002794.1 + 23447 0.72 0.914173
Target:  5'- aCgUGaUGUACGUCcggaucGACGUCGggGCGGa -3'
miRNA:   3'- gGgGC-ACAUGCGG------UUGCAGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 24809 0.69 0.975246
Target:  5'- uCCCCGUcgGcGCGaCCGACGaCGGGucACGGg -3'
miRNA:   3'- -GGGGCA--CaUGC-GGUUGCaGCUU--UGCC- -5'
10944 5' -52.1 NC_002794.1 + 26071 0.66 0.994885
Target:  5'- cCCCCGcGcACGCC-ACG-CGggGCa- -3'
miRNA:   3'- -GGGGCaCaUGCGGuUGCaGCuuUGcc -5'
10944 5' -52.1 NC_002794.1 + 30397 0.66 0.994885
Target:  5'- gCCCgcgaCGUG-AUGCCGugGUCG-AACGu -3'
miRNA:   3'- -GGG----GCACaUGCGGUugCAGCuUUGCc -5'
10944 5' -52.1 NC_002794.1 + 31344 0.69 0.972652
Target:  5'- cCCgCCGUGUcCGCCGcccgcuCGUCGAAGuCGu -3'
miRNA:   3'- -GG-GGCACAuGCGGUu-----GCAGCUUU-GCc -5'
10944 5' -52.1 NC_002794.1 + 32670 0.7 0.95558
Target:  5'- uCCCCGUcGUcCGCCAaccguccuccggagGCGUCGcGGGCGa -3'
miRNA:   3'- -GGGGCA-CAuGCGGU--------------UGCAGC-UUUGCc -5'
10944 5' -52.1 NC_002794.1 + 34831 0.79 0.590893
Target:  5'- cCCUCGccgGCGCCGgagcggGCGUCGGAGCGGg -3'
miRNA:   3'- -GGGGCacaUGCGGU------UGCAGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 35090 0.66 0.997218
Target:  5'- gCCCgagauCGUGgACGUCAGCGUgacCGAGAacCGGg -3'
miRNA:   3'- -GGG-----GCACaUGCGGUUGCA---GCUUU--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.