miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 5' -52.1 NC_002794.1 + 36364 0.72 0.908303
Target:  5'- gCCaCCGgGUgcGCGCCcGCGgCGAAGCGGu -3'
miRNA:   3'- -GG-GGCaCA--UGCGGuUGCaGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 36790 0.76 0.749336
Target:  5'- gCCgCCGUGUACGCCGAgGUCaGGugcuGCGa -3'
miRNA:   3'- -GG-GGCACAUGCGGUUgCAG-CUu---UGCc -5'
10944 5' -52.1 NC_002794.1 + 40599 0.67 0.989969
Target:  5'- cCUCCGaGUcguCGCCGGCGUcCGAcuccGCGGa -3'
miRNA:   3'- -GGGGCaCAu--GCGGUUGCA-GCUu---UGCC- -5'
10944 5' -52.1 NC_002794.1 + 43888 0.73 0.861026
Target:  5'- aCCCGgccGU-CGCCGGCGUCucgugaGGAGCGGc -3'
miRNA:   3'- gGGGCa--CAuGCGGUUGCAG------CUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 44524 0.75 0.777269
Target:  5'- gCCCGUGUccgcgagcGCGCCGuCGUCGucgccGGCGGc -3'
miRNA:   3'- gGGGCACA--------UGCGGUuGCAGCu----UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 47410 0.67 0.994103
Target:  5'- gCCgCCGUcgGCGCCGucGCG-CGGAGCGc -3'
miRNA:   3'- -GG-GGCAcaUGCGGU--UGCaGCUUUGCc -5'
10944 5' -52.1 NC_002794.1 + 52623 0.69 0.975246
Target:  5'- gCCCGac--CGCCGccGCGUCG-AACGGg -3'
miRNA:   3'- gGGGCacauGCGGU--UGCAGCuUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 53107 0.68 0.988645
Target:  5'- aCCCCGgcgGUuccggaGCUcGCGUCGAccGCGGc -3'
miRNA:   3'- -GGGGCa--CAug----CGGuUGCAGCUu-UGCC- -5'
10944 5' -52.1 NC_002794.1 + 53247 0.72 0.919815
Target:  5'- gCCCGcc-GCGCCGGCGUCGccgcgcgacAACGGg -3'
miRNA:   3'- gGGGCacaUGCGGUUGCAGCu--------UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 53590 0.68 0.98195
Target:  5'- -aCCGUGUcgGCGUCGGCGUCac--CGGg -3'
miRNA:   3'- ggGGCACA--UGCGGUUGCAGcuuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 55340 0.7 0.966885
Target:  5'- aCCCGggGUcGCGCCcgaGGCGgcCGAGGCGGc -3'
miRNA:   3'- gGGGCa-CA-UGCGG---UUGCa-GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 58053 0.74 0.837684
Target:  5'- uCCCCGUcgGCGgccCCGGCGgcggCGGGACGGg -3'
miRNA:   3'- -GGGGCAcaUGC---GGUUGCa---GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 59189 0.7 0.963701
Target:  5'- aCCCCGUGgcggucgACGCgcACGUCGGcgucuCGGc -3'
miRNA:   3'- -GGGGCACa------UGCGguUGCAGCUuu---GCC- -5'
10944 5' -52.1 NC_002794.1 + 61622 0.69 0.972652
Target:  5'- uCUUCGUcauggugcgacaGUugGUCGACGUCGucACGGa -3'
miRNA:   3'- -GGGGCA------------CAugCGGUUGCAGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 62048 0.69 0.969867
Target:  5'- gCCCUgucgGUGgccgACGCCGGCGgCGAcgccGGCGGc -3'
miRNA:   3'- -GGGG----CACa---UGCGGUUGCaGCU----UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 63642 0.66 0.994885
Target:  5'- aCCUCGUcugcGUGacCGCCAACGUCu---CGGa -3'
miRNA:   3'- -GGGGCA----CAU--GCGGUUGCAGcuuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 64675 0.69 0.975246
Target:  5'- aCCCGacuccUGUGCGaCGACGgCGAGGCGa -3'
miRNA:   3'- gGGGC-----ACAUGCgGUUGCaGCUUUGCc -5'
10944 5' -52.1 NC_002794.1 + 65976 0.66 0.994885
Target:  5'- cCUCCG---GCaCCAACGUCGAAcuggGCGGu -3'
miRNA:   3'- -GGGGCacaUGcGGUUGCAGCUU----UGCC- -5'
10944 5' -52.1 NC_002794.1 + 66364 0.67 0.994103
Target:  5'- gUCCCaGUcGU-CGCCGcucuCGUCGAAcGCGGg -3'
miRNA:   3'- -GGGG-CA-CAuGCGGUu---GCAGCUU-UGCC- -5'
10944 5' -52.1 NC_002794.1 + 66398 0.7 0.960308
Target:  5'- uCCCCGUcGUccCGCCGAcCGUgCGaAGACGGc -3'
miRNA:   3'- -GGGGCA-CAu-GCGGUU-GCA-GC-UUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.