miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10944 5' -52.1 NC_002794.1 + 193814 0.69 0.979888
Target:  5'- gCUCGUcugGCGCCGACG-CGucGCGGc -3'
miRNA:   3'- gGGGCAca-UGCGGUUGCaGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 190291 0.66 0.997636
Target:  5'- gUCCGUGUcgaaGCGCCGGCGgCcGAACa- -3'
miRNA:   3'- gGGGCACA----UGCGGUUGCaGcUUUGcc -5'
10944 5' -52.1 NC_002794.1 + 190109 0.68 0.988645
Target:  5'- gCCCCGc---CGUCcGCGcCGAAGCGGu -3'
miRNA:   3'- -GGGGCacauGCGGuUGCaGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 183927 0.76 0.758758
Target:  5'- uCCCCGgcaggGUcacCGCCAcgaACGUCGAcGCGGu -3'
miRNA:   3'- -GGGGCa----CAu--GCGGU---UGCAGCUuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 183672 0.66 0.994885
Target:  5'- gCCCGa--GCGCCGACGggUCGAGcgcccgccgcgcGCGGc -3'
miRNA:   3'- gGGGCacaUGCGGUUGC--AGCUU------------UGCC- -5'
10944 5' -52.1 NC_002794.1 + 183539 0.66 0.995173
Target:  5'- gCCCCGUccgcccggggacacuGcGCGCCGAgcCGcCGAcACGGg -3'
miRNA:   3'- -GGGGCA---------------CaUGCGGUU--GCaGCUuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 182197 0.72 0.919815
Target:  5'- gCCUCG---GCGCCGGCGUCGcgccACGGg -3'
miRNA:   3'- -GGGGCacaUGCGGUUGCAGCuu--UGCC- -5'
10944 5' -52.1 NC_002794.1 + 181160 0.74 0.829534
Target:  5'- gCCCGUccgccGCGCCGACGgCGAAcgGCGGa -3'
miRNA:   3'- gGGGCAca---UGCGGUUGCaGCUU--UGCC- -5'
10944 5' -52.1 NC_002794.1 + 178211 0.7 0.963701
Target:  5'- cCCUCG-GUA-GCCucgGCGUaCGAAACGGa -3'
miRNA:   3'- -GGGGCaCAUgCGGu--UGCA-GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 170557 0.68 0.988645
Target:  5'- gCCUacgGUGUAUGCU--CGUCGGAcACGGg -3'
miRNA:   3'- -GGGg--CACAUGCGGuuGCAGCUU-UGCC- -5'
10944 5' -52.1 NC_002794.1 + 159559 0.69 0.979888
Target:  5'- cUCCCGUGUcgaGCCAuucauUGUUGGcgGGCGGg -3'
miRNA:   3'- -GGGGCACAug-CGGUu----GCAGCU--UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 152953 0.68 0.988645
Target:  5'- uCUCCGgacACGCCGACGccuuggUCGggGCGc -3'
miRNA:   3'- -GGGGCacaUGCGGUUGC------AGCuuUGCc -5'
10944 5' -52.1 NC_002794.1 + 151027 0.66 0.997636
Target:  5'- gCCCGUGguCGCC--CGUCuGAuGACGGg -3'
miRNA:   3'- gGGGCACauGCGGuuGCAG-CU-UUGCC- -5'
10944 5' -52.1 NC_002794.1 + 150530 0.67 0.994103
Target:  5'- gCCCCGUagccgGgccgGCGCCAugGcCGucuCGGc -3'
miRNA:   3'- -GGGGCA-----Ca---UGCGGUugCaGCuuuGCC- -5'
10944 5' -52.1 NC_002794.1 + 149268 0.67 0.993229
Target:  5'- cCCUCGUcccCGCCGGCGgCGcgGCGGc -3'
miRNA:   3'- -GGGGCAcauGCGGUUGCaGCuuUGCC- -5'
10944 5' -52.1 NC_002794.1 + 147109 0.67 0.99194
Target:  5'- gCCCGgcccaaggacgaagACGUCGACGgcgguUCGAGACGGc -3'
miRNA:   3'- gGGGCaca-----------UGCGGUUGC-----AGCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 144822 0.69 0.975246
Target:  5'- gUCCGUGcACGCgGACGagccgcUGGAGCGGg -3'
miRNA:   3'- gGGGCACaUGCGgUUGCa-----GCUUUGCC- -5'
10944 5' -52.1 NC_002794.1 + 143583 0.68 0.98195
Target:  5'- uCCUCGgcgGCGCUGugGUCGAAcacCGGc -3'
miRNA:   3'- -GGGGCacaUGCGGUugCAGCUUu--GCC- -5'
10944 5' -52.1 NC_002794.1 + 143271 0.68 0.985593
Target:  5'- gCCCGgcccgGCGCCGGCcgcUCGggGuCGGg -3'
miRNA:   3'- gGGGCaca--UGCGGUUGc--AGCuuU-GCC- -5'
10944 5' -52.1 NC_002794.1 + 142487 0.69 0.975246
Target:  5'- aCgCGUGcgGCGCCGgcagcgACGUggCGGAACGGa -3'
miRNA:   3'- gGgGCACa-UGCGGU------UGCA--GCUUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.