Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10945 | 3' | -55.5 | NC_002794.1 | + | 83833 | 0.66 | 0.956822 |
Target: 5'- aGCCUccGGCCGAUcggucgccgaUCGGGaagccgucgucCCGGU-CGGCg -3' miRNA: 3'- -UGGA--CCGGCUA----------AGCCU-----------GGUCAaGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 32176 | 0.66 | 0.956822 |
Target: 5'- cGCCUGGCCccGGUcccgcagaUCGaGAUgGcGUUCGACg -3' miRNA: 3'- -UGGACCGG--CUA--------AGC-CUGgU-CAAGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 89954 | 0.66 | 0.95299 |
Target: 5'- aGCCgacGUCGAggcgUUCGGACCGuggugcgccggcGUUCGACc -3' miRNA: 3'- -UGGac-CGGCU----AAGCCUGGU------------CAAGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 6537 | 0.66 | 0.95299 |
Target: 5'- gACCgGGCCGAcgCGGugUug--CGACa -3' miRNA: 3'- -UGGaCCGGCUaaGCCugGucaaGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 158438 | 0.66 | 0.948936 |
Target: 5'- cGCCaGGCgGGUuccgcgcucuUCGGGCCGGgagguUUUGACa -3' miRNA: 3'- -UGGaCCGgCUA----------AGCCUGGUC-----AAGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 143282 | 0.66 | 0.948936 |
Target: 5'- cGCC-GGCCGcucggggUCGGGCgGGUgcagcgCGGCg -3' miRNA: 3'- -UGGaCCGGCua-----AGCCUGgUCAa-----GCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 80621 | 0.66 | 0.948936 |
Target: 5'- uGCCUgccGGCCGAgcaccUCGcGACCGG--CGACc -3' miRNA: 3'- -UGGA---CCGGCUa----AGC-CUGGUCaaGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 106347 | 0.66 | 0.944656 |
Target: 5'- cGCCgGGUCGAcggCGGgcgggcGCCGGUUCGcGCg -3' miRNA: 3'- -UGGaCCGGCUaa-GCC------UGGUCAAGC-UG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 175178 | 0.66 | 0.940147 |
Target: 5'- uGCCUGGCUGAauagaacgucUUCGG-CCuuGgcgUCGAUg -3' miRNA: 3'- -UGGACCGGCU----------AAGCCuGGu-Ca--AGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 160922 | 0.66 | 0.940147 |
Target: 5'- uGCCUGGuuGGcgaUCGGcCCAGgUgGACu -3' miRNA: 3'- -UGGACCggCUa--AGCCuGGUCaAgCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 20371 | 0.67 | 0.935409 |
Target: 5'- cACCUGcGCCGGaUCGucGACgCGGUgCGGCg -3' miRNA: 3'- -UGGAC-CGGCUaAGC--CUG-GUCAaGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 154346 | 0.67 | 0.935409 |
Target: 5'- uGCCgcGGCCGAgcucccgcgCGGuCCAGgccgCGGCg -3' miRNA: 3'- -UGGa-CCGGCUaa-------GCCuGGUCaa--GCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 99756 | 0.67 | 0.918127 |
Target: 5'- gUCUGGCCGAcguugccgccgcccgCGGuGCCGGcgUCGACu -3' miRNA: 3'- uGGACCGGCUaa-------------GCC-UGGUCa-AGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 91917 | 0.67 | 0.914136 |
Target: 5'- cACCUGGCCuGGgccugCGcGACCAGUcCGcACc -3' miRNA: 3'- -UGGACCGG-CUaa---GC-CUGGUCAaGC-UG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 126031 | 0.68 | 0.902113 |
Target: 5'- gAUCUGGCCGAacUUCGGcCUGGcggUCGGa -3' miRNA: 3'- -UGGACCGGCU--AAGCCuGGUCa--AGCUg -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 80732 | 0.68 | 0.901488 |
Target: 5'- gACCUGGCCcuccgcgacggGGUccgggccacgcgcUCGGACCucUUCGACc -3' miRNA: 3'- -UGGACCGG-----------CUA-------------AGCCUGGucAAGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 189326 | 0.68 | 0.884449 |
Target: 5'- -gCUGGUCGGggggcagcagcuccaGGaACCAGUUCGACg -3' miRNA: 3'- ugGACCGGCUaag------------CC-UGGUCAAGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 129171 | 0.68 | 0.882387 |
Target: 5'- gGCCgaUGGCCGuucgaUCGGccuCCGGgUCGACg -3' miRNA: 3'- -UGG--ACCGGCua---AGCCu--GGUCaAGCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 107525 | 0.69 | 0.860722 |
Target: 5'- cGCCgacGGCCGGcgCGGcGCCGGcggCGACg -3' miRNA: 3'- -UGGa--CCGGCUaaGCC-UGGUCaa-GCUG- -5' |
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10945 | 3' | -55.5 | NC_002794.1 | + | 126071 | 0.69 | 0.853091 |
Target: 5'- cGCCUGGCC----UGGACCGGccugCGGCc -3' miRNA: 3'- -UGGACCGGcuaaGCCUGGUCaa--GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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