miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10945 3' -55.5 NC_002794.1 + 126071 0.69 0.853091
Target:  5'- cGCCUGGCC----UGGACCGGccugCGGCc -3'
miRNA:   3'- -UGGACCGGcuaaGCCUGGUCaa--GCUG- -5'
10945 3' -55.5 NC_002794.1 + 121482 0.69 0.837253
Target:  5'- gACC--GCCGGUUCGGacgcggccuccGCCGGggCGACg -3'
miRNA:   3'- -UGGacCGGCUAAGCC-----------UGGUCaaGCUG- -5'
10945 3' -55.5 NC_002794.1 + 121005 0.7 0.82069
Target:  5'- gGCCaUGGCCGAgggUCGGccucccaagagGCCGGagagCGGCg -3'
miRNA:   3'- -UGG-ACCGGCUa--AGCC-----------UGGUCaa--GCUG- -5'
10945 3' -55.5 NC_002794.1 + 122169 0.7 0.776508
Target:  5'- uACCUGGCCGAgcaCGGcgcgcGCguGUgCGACg -3'
miRNA:   3'- -UGGACCGGCUaa-GCC-----UGguCAaGCUG- -5'
10945 3' -55.5 NC_002794.1 + 44992 0.71 0.767261
Target:  5'- cGCCuUGGCCGug-CGGACCuGUUgcaGACu -3'
miRNA:   3'- -UGG-ACCGGCuaaGCCUGGuCAAg--CUG- -5'
10945 3' -55.5 NC_002794.1 + 32607 0.71 0.755067
Target:  5'- gGCCggGGCCGGggaUCGGGCCcgccgacgaagaggGGggCGACg -3'
miRNA:   3'- -UGGa-CCGGCUa--AGCCUGG--------------UCaaGCUG- -5'
10945 3' -55.5 NC_002794.1 + 181303 0.72 0.689819
Target:  5'- cCCaGGCCGAgcaGGAUCAGcgCGACg -3'
miRNA:   3'- uGGaCCGGCUaagCCUGGUCaaGCUG- -5'
10945 3' -55.5 NC_002794.1 + 77400 0.72 0.679837
Target:  5'- uACCUGGCCG--UCGGcgagauccugcACCAGacCGACa -3'
miRNA:   3'- -UGGACCGGCuaAGCC-----------UGGUCaaGCUG- -5'
10945 3' -55.5 NC_002794.1 + 130321 0.72 0.669817
Target:  5'- uCCUGGCCGAgacggCGGACgaAGgcggCGACg -3'
miRNA:   3'- uGGACCGGCUaa---GCCUGg-UCaa--GCUG- -5'
10945 3' -55.5 NC_002794.1 + 90991 0.75 0.520175
Target:  5'- uACCgGGCCGAggCGGAgCGGgcCGACa -3'
miRNA:   3'- -UGGaCCGGCUaaGCCUgGUCaaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.