miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10945 5' -58.3 NC_002794.1 + 128169 0.66 0.89434
Target:  5'- cGCGCCGcggacgGGUCgguGACCUCGUCggUCGCGAc -3'
miRNA:   3'- -CGUGGC------UUAG---CUGGGGCAG--GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 28724 0.66 0.89434
Target:  5'- cCGCCGuc-CGACCgUGUCCC-CGAGg -3'
miRNA:   3'- cGUGGCuuaGCUGGgGCAGGGcGCUU- -5'
10945 5' -58.3 NC_002794.1 + 124495 0.66 0.89434
Target:  5'- cCGCCGGAUgGAgUCgCGUCggCCGCGAGa -3'
miRNA:   3'- cGUGGCUUAgCUgGG-GCAG--GGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 131857 0.66 0.89434
Target:  5'- cGCACCGGAUccCGACUCUugggCgCCGCGGc -3'
miRNA:   3'- -CGUGGCUUA--GCUGGGGca--G-GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 50385 0.66 0.893703
Target:  5'- aGgACCGAGUCGuaaaacaACCCCGUCuuGgCa-- -3'
miRNA:   3'- -CgUGGCUUAGC-------UGGGGCAGggC-Gcuu -5'
10945 5' -58.3 NC_002794.1 + 66011 0.66 0.887874
Target:  5'- gGCACCGAggCGGCCgcggUCGUCgCCGUc-- -3'
miRNA:   3'- -CGUGGCUuaGCUGG----GGCAG-GGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 83585 0.66 0.887874
Target:  5'- cCACCacucCGACCCCGUCgCGCu-- -3'
miRNA:   3'- cGUGGcuuaGCUGGGGCAGgGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 107272 0.66 0.887874
Target:  5'- cGCGCCGuccgccgccGUCG-CCCCGUCgucgacgcuccUCGCGGGg -3'
miRNA:   3'- -CGUGGCu--------UAGCuGGGGCAG-----------GGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 40944 0.66 0.887874
Target:  5'- uGCGCgcAGUCGAagaCCUGUCCCGCc-- -3'
miRNA:   3'- -CGUGgcUUAGCUg--GGGCAGGGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 193582 0.66 0.887874
Target:  5'- cGCGCCGGuggCGGCUcaCCGUCguguagcguaCCGCGGc -3'
miRNA:   3'- -CGUGGCUua-GCUGG--GGCAG----------GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 61876 0.66 0.887874
Target:  5'- cGCGCCGucGUCGGCgCCG-CgCgGCGAGc -3'
miRNA:   3'- -CGUGGCu-UAGCUGgGGCaG-GgCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 21828 0.66 0.883894
Target:  5'- cGCACaCGggUCGuaacaguucACCCCGaUCgccccauugaacgguCCGCGAGg -3'
miRNA:   3'- -CGUG-GCuuAGC---------UGGGGC-AG---------------GGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 32172 0.66 0.881199
Target:  5'- gGC-CCGcc-UGGCCCCgGUCCCGCa-- -3'
miRNA:   3'- -CGuGGCuuaGCUGGGG-CAGGGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 20375 0.66 0.881199
Target:  5'- uGCGCCGGaucGUCGACgCgGUgCgGCGGGa -3'
miRNA:   3'- -CGUGGCU---UAGCUGgGgCAgGgCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 131388 0.66 0.877096
Target:  5'- gGCGCCGcgcccgucaucaCGGCCUCG-CCCGUGAu -3'
miRNA:   3'- -CGUGGCuua---------GCUGGGGCaGGGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 93708 0.66 0.874319
Target:  5'- cGCGCCuGGUCGACCUgcUGUUgcgccgcucgcgCCGCGAGa -3'
miRNA:   3'- -CGUGGcUUAGCUGGG--GCAG------------GGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 35969 0.66 0.874319
Target:  5'- -gACCGGA-CGGgCCCG-CUCGCGGAc -3'
miRNA:   3'- cgUGGCUUaGCUgGGGCaGGGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 39055 0.66 0.874319
Target:  5'- gGCACC-AcgUGaACCaguCGUCCCGCGAc -3'
miRNA:   3'- -CGUGGcUuaGC-UGGg--GCAGGGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 10995 0.66 0.874319
Target:  5'- -gGCCGcaAGUgGACCgUGUCCCGCa-- -3'
miRNA:   3'- cgUGGC--UUAgCUGGgGCAGGGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 90151 0.66 0.874319
Target:  5'- -uGCgGAAUCGGgUCCGggucCCCGUGAAg -3'
miRNA:   3'- cgUGgCUUAGCUgGGGCa---GGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.