miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10945 5' -58.3 NC_002794.1 + 187770 0.83 0.143041
Target:  5'- gGCGCCGGucgccUCGACCCCGgaggaacggCCCGCGAAg -3'
miRNA:   3'- -CGUGGCUu----AGCUGGGGCa--------GGGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 55415 0.75 0.402614
Target:  5'- -gGCCGAggCGACCCCGgcgUCCGCGu- -3'
miRNA:   3'- cgUGGCUuaGCUGGGGCa--GGGCGCuu -5'
10945 5' -58.3 NC_002794.1 + 84962 0.75 0.419312
Target:  5'- gGCACgCGGAUCcuuGGCCCCGg-CCGCGAAa -3'
miRNA:   3'- -CGUG-GCUUAG---CUGGGGCagGGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 191520 0.74 0.427817
Target:  5'- aGCGCCGGgcGUCGGCCCgCGccUCCCGCc-- -3'
miRNA:   3'- -CGUGGCU--UAGCUGGG-GC--AGGGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 183359 0.74 0.448636
Target:  5'- cGCGCCGGAccccaggucccggcCGuGCCCCGUCCCGcCGAGc -3'
miRNA:   3'- -CGUGGCUUa-------------GC-UGGGGCAGGGC-GCUU- -5'
10945 5' -58.3 NC_002794.1 + 150648 0.74 0.462823
Target:  5'- gGCACgCGcGUCGACCUgGgcuggCCCGCGAAc -3'
miRNA:   3'- -CGUG-GCuUAGCUGGGgCa----GGGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 76975 0.74 0.471808
Target:  5'- cCGCCGAGcUCGACCUgGUCCUGuCGAc -3'
miRNA:   3'- cGUGGCUU-AGCUGGGgCAGGGC-GCUu -5'
10945 5' -58.3 NC_002794.1 + 146329 0.73 0.508589
Target:  5'- cGCGgCGGAuUCGACCCCGUCgucgaUCGCGGc -3'
miRNA:   3'- -CGUgGCUU-AGCUGGGGCAG-----GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 49290 0.73 0.508589
Target:  5'- gGCGCCGc--CGccuCCCCGUCCCGCa-- -3'
miRNA:   3'- -CGUGGCuuaGCu--GGGGCAGGGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 99615 0.73 0.521749
Target:  5'- cGCGCCGccUCGGCCCCGUuucugcagaucgugcCCCGgGGc -3'
miRNA:   3'- -CGUGGCuuAGCUGGGGCA---------------GGGCgCUu -5'
10945 5' -58.3 NC_002794.1 + 83009 0.72 0.536948
Target:  5'- cGCGCCcGAUCugcGCCCCGUCCCGgCGc- -3'
miRNA:   3'- -CGUGGcUUAGc--UGGGGCAGGGC-GCuu -5'
10945 5' -58.3 NC_002794.1 + 181597 0.72 0.546525
Target:  5'- cGCgACCGggUCG-CCCCGUUgCCGCa-- -3'
miRNA:   3'- -CG-UGGCuuAGCuGGGGCAG-GGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 192475 0.72 0.575557
Target:  5'- aGCGCCGAGcccUCGuccGCCUCGUCCCacggccGCGAc -3'
miRNA:   3'- -CGUGGCUU---AGC---UGGGGCAGGG------CGCUu -5'
10945 5' -58.3 NC_002794.1 + 181473 0.72 0.575557
Target:  5'- cGCGCCGAGUCGccaggcagacgaGCCCCGcgagCCCGaCGc- -3'
miRNA:   3'- -CGUGGCUUAGC------------UGGGGCa---GGGC-GCuu -5'
10945 5' -58.3 NC_002794.1 + 145750 0.72 0.585317
Target:  5'- gGCAUCGAcggCGACCCCGagcgagcgCCaCGCGGAg -3'
miRNA:   3'- -CGUGGCUua-GCUGGGGCa-------GG-GCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 54385 0.72 0.585317
Target:  5'- uGCAgacCCGcGUCGACgCCCGcCUCGCGGAg -3'
miRNA:   3'- -CGU---GGCuUAGCUG-GGGCaGGGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 142811 0.72 0.585317
Target:  5'- -gGCCGggUCGGCCUCGUUCaaCGCGu- -3'
miRNA:   3'- cgUGGCuuAGCUGGGGCAGG--GCGCuu -5'
10945 5' -58.3 NC_002794.1 + 26094 0.71 0.595107
Target:  5'- aGCGCCGA--CGGCCCCGgcgaUCgCCGUGGg -3'
miRNA:   3'- -CGUGGCUuaGCUGGGGC----AG-GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 72718 0.71 0.604923
Target:  5'- cCACCGugcccaugaCGGCCCCGcgcUCCCGCGGc -3'
miRNA:   3'- cGUGGCuua------GCUGGGGC---AGGGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 47402 0.71 0.613774
Target:  5'- aGC-CCGAagccgccGUCGGCgCCGUCgCGCGGAg -3'
miRNA:   3'- -CGuGGCU-------UAGCUGgGGCAGgGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.