miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10945 5' -58.3 NC_002794.1 + 10286 0.66 0.867238
Target:  5'- uCACCGucucagaCGACCCCGU-CgGCGAGa -3'
miRNA:   3'- cGUGGCuua----GCUGGGGCAgGgCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 131424 0.66 0.867238
Target:  5'- gGCACCGGGcccgucaucaCGACCUCG-CCCGUGu- -3'
miRNA:   3'- -CGUGGCUUa---------GCUGGGGCaGGGCGCuu -5'
10945 5' -58.3 NC_002794.1 + 131460 0.66 0.867238
Target:  5'- gGCACCGGGcccgucaucaCGACCUCG-CCCGUGu- -3'
miRNA:   3'- -CGUGGCUUa---------GCUGGGGCaGGGCGCuu -5'
10945 5' -58.3 NC_002794.1 + 121405 0.66 0.867238
Target:  5'- gGCGCCGGGaccgCGACCgucgCCGggaCCGCGGc -3'
miRNA:   3'- -CGUGGCUUa---GCUGG----GGCag-GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 4843 0.66 0.867238
Target:  5'- cCACCuGcgCGGCCCaCGUgCCCGaCGAAg -3'
miRNA:   3'- cGUGGcUuaGCUGGG-GCA-GGGC-GCUU- -5'
10945 5' -58.3 NC_002794.1 + 182667 0.66 0.867238
Target:  5'- -aGCCGAuaGagGACCCgGUCCC-CGGAg -3'
miRNA:   3'- cgUGGCU--UagCUGGGgCAGGGcGCUU- -5'
10945 5' -58.3 NC_002794.1 + 60184 0.66 0.865076
Target:  5'- gGCGCuCGGccugccucuucagcGUCGACCCCuacgaCCGCGAc -3'
miRNA:   3'- -CGUG-GCU--------------UAGCUGGGGcag--GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 120941 0.66 0.862895
Target:  5'- uGUuCCGAcucgaaaaguuuuacGUCGACCUCGgcccggCCUGCGAGu -3'
miRNA:   3'- -CGuGGCU---------------UAGCUGGGGCa-----GGGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 76494 0.66 0.859962
Target:  5'- aGCuCCGAcccCGACCCCGgCCC-CGAc -3'
miRNA:   3'- -CGuGGCUua-GCUGGGGCaGGGcGCUu -5'
10945 5' -58.3 NC_002794.1 + 36914 0.66 0.859962
Target:  5'- cGCGgCGc--CGGCCCCGcgaCCGCGGAg -3'
miRNA:   3'- -CGUgGCuuaGCUGGGGCag-GGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 15114 0.66 0.859962
Target:  5'- cGCGCCGGAgacCGACCgCCGUguucuaCGUGAAu -3'
miRNA:   3'- -CGUGGCUUa--GCUGG-GGCAgg----GCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 82462 0.66 0.859962
Target:  5'- gGC-CCGAccUCGACgCCGUCggccuCCGCGAc -3'
miRNA:   3'- -CGuGGCUu-AGCUGgGGCAG-----GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 183677 0.66 0.859962
Target:  5'- aGCGCCGAcggGUCGAgCgCCCG-CCgCGCGc- -3'
miRNA:   3'- -CGUGGCU---UAGCU-G-GGGCaGG-GCGCuu -5'
10945 5' -58.3 NC_002794.1 + 49480 0.66 0.859962
Target:  5'- cCGCCGcgggucuGUCGACCUCGUCgCCGUc-- -3'
miRNA:   3'- cGUGGCu------UAGCUGGGGCAG-GGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 60889 0.67 0.852494
Target:  5'- gGCGCCGuGGUCcccAUCCCGUUCCGCc-- -3'
miRNA:   3'- -CGUGGC-UUAGc--UGGGGCAGGGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 63967 0.67 0.852494
Target:  5'- cGCGcCCGAAUC-ACCgCCGUgaCCCGCa-- -3'
miRNA:   3'- -CGU-GGCUUAGcUGG-GGCA--GGGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 61515 0.67 0.852494
Target:  5'- cCGCCGGAcggCGGCCgCCGgcggcCgCCGCGAAg -3'
miRNA:   3'- cGUGGCUUa--GCUGG-GGCa----G-GGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 138196 0.67 0.852494
Target:  5'- -aGCCGGuccacguccaCGGCuUCCGUCCCGCGGc -3'
miRNA:   3'- cgUGGCUua--------GCUG-GGGCAGGGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 23605 0.67 0.844841
Target:  5'- cCGCCGAccCGACCCCGcgggcgCCCG-GAc -3'
miRNA:   3'- cGUGGCUuaGCUGGGGCa-----GGGCgCUu -5'
10945 5' -58.3 NC_002794.1 + 141136 0.67 0.844841
Target:  5'- gGCuCCGAGUCG-CCgaagCCGgcggaUCCCGCGAc -3'
miRNA:   3'- -CGuGGCUUAGCuGG----GGC-----AGGGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.