miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10945 5' -58.3 NC_002794.1 + 4843 0.66 0.867238
Target:  5'- cCACCuGcgCGGCCCaCGUgCCCGaCGAAg -3'
miRNA:   3'- cGUGGcUuaGCUGGG-GCA-GGGC-GCUU- -5'
10945 5' -58.3 NC_002794.1 + 8665 0.67 0.829006
Target:  5'- cCACCGugaaccuGUCGAUCUCGgcCCCGUGGAc -3'
miRNA:   3'- cGUGGCu------UAGCUGGGGCa-GGGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 10286 0.66 0.867238
Target:  5'- uCACCGucucagaCGACCCCGU-CgGCGAGa -3'
miRNA:   3'- cGUGGCuua----GCUGGGGCAgGgCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 10995 0.66 0.874319
Target:  5'- -gGCCGcaAGUgGACCgUGUCCCGCa-- -3'
miRNA:   3'- cgUGGC--UUAgCUGGgGCAGGGCGcuu -5'
10945 5' -58.3 NC_002794.1 + 11858 0.69 0.731646
Target:  5'- cCGCCGGcgaCGACcgCCCGcCCCGCGAc -3'
miRNA:   3'- cGUGGCUua-GCUG--GGGCaGGGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 12232 0.68 0.795401
Target:  5'- gGCGCCGg--CGGCgCCGUCC-GCGGc -3'
miRNA:   3'- -CGUGGCuuaGCUGgGGCAGGgCGCUu -5'
10945 5' -58.3 NC_002794.1 + 12425 0.68 0.786639
Target:  5'- cGCGCCGAc-UGGCagCUGUCCCGCGu- -3'
miRNA:   3'- -CGUGGCUuaGCUGg-GGCAGGGCGCuu -5'
10945 5' -58.3 NC_002794.1 + 15114 0.66 0.859962
Target:  5'- cGCGCCGGAgacCGACCgCCGUguucuaCGUGAAu -3'
miRNA:   3'- -CGUGGCUUa--GCUGG-GGCAgg----GCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 16343 0.7 0.673777
Target:  5'- gGCACCGAcgacGUCGGCgccaCCCGcaCCCGCGu- -3'
miRNA:   3'- -CGUGGCU----UAGCUG----GGGCa-GGGCGCuu -5'
10945 5' -58.3 NC_002794.1 + 17436 0.69 0.74106
Target:  5'- cGCGCCGc--CGGCgCUCGggCCCGCGAc -3'
miRNA:   3'- -CGUGGCuuaGCUG-GGGCa-GGGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 17630 0.69 0.731646
Target:  5'- cGCGgCGAG-CGAUCCCGcCgCCGCGGc -3'
miRNA:   3'- -CGUgGCUUaGCUGGGGCaG-GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 18550 0.68 0.795401
Target:  5'- aGCACgGcggCGACCgcgaCCGUgCCCGCGAc -3'
miRNA:   3'- -CGUGgCuuaGCUGG----GGCA-GGGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 20159 0.67 0.844841
Target:  5'- cCGCCGccuggCGGCCCCauaCCGCGAGa -3'
miRNA:   3'- cGUGGCuua--GCUGGGGcagGGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 20375 0.66 0.881199
Target:  5'- uGCGCCGGaucGUCGACgCgGUgCgGCGGGa -3'
miRNA:   3'- -CGUGGCU---UAGCUGgGgCAgGgCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 21828 0.66 0.883894
Target:  5'- cGCACaCGggUCGuaacaguucACCCCGaUCgccccauugaacgguCCGCGAGg -3'
miRNA:   3'- -CGUG-GCuuAGC---------UGGGGC-AG---------------GGCGCUU- -5'
10945 5' -58.3 NC_002794.1 + 23605 0.67 0.844841
Target:  5'- cCGCCGAccCGACCCCGcgggcgCCCG-GAc -3'
miRNA:   3'- cGUGGCUuaGCUGGGGCa-----GGGCgCUu -5'
10945 5' -58.3 NC_002794.1 + 24167 0.68 0.759613
Target:  5'- -aACCGGAUaacCGGCCUCGacCCCGCGGc -3'
miRNA:   3'- cgUGGCUUA---GCUGGGGCa-GGGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 26094 0.71 0.595107
Target:  5'- aGCGCCGA--CGGCCCCGgcgaUCgCCGUGGg -3'
miRNA:   3'- -CGUGGCUuaGCUGGGGC----AG-GGCGCUu -5'
10945 5' -58.3 NC_002794.1 + 28724 0.66 0.89434
Target:  5'- cCGCCGuc-CGACCgUGUCCC-CGAGg -3'
miRNA:   3'- cGUGGCuuaGCUGGgGCAGGGcGCUU- -5'
10945 5' -58.3 NC_002794.1 + 32172 0.66 0.881199
Target:  5'- gGC-CCGcc-UGGCCCCgGUCCCGCa-- -3'
miRNA:   3'- -CGuGGCuuaGCUGGGG-CAGGGCGcuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.